Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq1013 1038 0.0 >seq1013 Length=3715 Score = 1038 bits (1150), Expect = 0.0 Identities = 1936/2791 (69%), Gaps = 114/2791 (4%) Strand=Plus/Minus Query 37590 CATGCCCTTGCGGG--TGGCACCCGTG-GAGTCGAACGCACCGGCCTTGATCAAGGACTC 37646 || ||||||||||| |||| || | ||||||||||| || |||||||||| ||||| Sbjct 2847 CAGGCCCTTGCGGGAGTGGC---CGAGCGAGTCGAACGCGCCCGCCTTGATCAGCGACTC 2791 Query 37647 GACGGCTCGCTTGCTCACGTTCGCCTGAGTCG-CCGACCGAAGGAAGTCCGGCAGGGAGG 37705 |||| | |||| | | || | | |||| || || |||||||| | | | | Sbjct 2790 GACGACCTTCTTGTTGCAGA-CGACCGCGTCGACCTTGCGCAGGAAGTCGGAGAAGTCGA 2732 Query 37706 TGAACTTCCCCCAGGCTTCCCGCAGTTGGACGATCTCATCGACCATGCCCTCGCCCACGT 37765 ||| |||||| | |||| ||||||| | ||||| | | | || |||| Sbjct 2731 CGAAGTTCCCCTTCTCCCGCCGCGCGGCGACGATCGCGTCGACGACGTTGTGCCCGACGT 2672 Query 37766 TCTTCACGGCGGTCAGCCCGAAGCGGATCTCCCGCTCCCCGTTCGGGGTGAAGGAGGAGT 37825 | | | || || ||||| ||||| || || ||| ||| | |||| | Sbjct 2671 TGCGGATGCCGCCGAGGCCGAAACGGATGTCG---TCGCCGACCGGCGCGAAGTTGCGCA 2615 Query 37826 TCGAGACCGACACGTCGGGCGGCAGGACCCGAAGGCCCATGCGCCTGCACTCGCCGAGGT 37885 |||| | ||||||||||| |||||| | |||||| || | |||||| | |||| Sbjct 2614 CCGAGTCGTTGACGTCGGGCGGGAGGACCGTGATGCCCATCCGGCGGCACTCCGCCAGGT 2555 Query 37886 A---CGTGGCCATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACT 37942 | || |||| |||| ||||||||||| |||||||||||||||| | |||||||||| Sbjct 2554 AGACCGCGGCC---TTGTCCTTGTCGTCGCGCACCGAGGTGAGCACGCCGGCCATGTACT 2498 Query 37943 CGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGTCCGTACGCCGCAG 38002 |||||||||||| || ||| ||||| ||||| | ||| | | | ||||| || || | Sbjct 2497 CGGCCGGGTAGTTCGCCTTGAGGTAGGCCGTCCAGTACGACACCACGCCGTAGGCGGCGG 2438 Query 38003 AGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCCGGA 38062 |||| || |||||||||||| ||| ||| || | || | |||||| | | | || Sbjct 2437 AGTGGGCGCGGTTGAAGGCGTAGTCGGAGAACGGGAGCAGGATGTCCCAGAGAGTCTTGA 2378 Query 38063 TGGCAGCCTCCGAGTAGCCTCGCTCGCTCGCCCCCTTCTGGAAGTTCACGAACTCCTTGG 38122 || ||| | |||||||| || || |||| |||| || |||||||| Sbjct 2377 CCGCGGCCGCGGAGTAGCCGTTGTCCTTCATGCCCTGGGCGAAGCCGGCGTACTCCTTGT 2318 Query 38123 CCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAGGTCGGCCTGACCGAGGG 38182 |||| | ||| ||||||||||||||| ||||| ||||| ||||| ||||| ||||| | Sbjct 2317 CCAGGATCTCCTTCTTCTTCTTGCCCATCGCGCGGCGGAGCAGGTCCGCCTGGCCGAGCG 2258 Query 38183 TGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGA 38242 |||| || ||||| | |||||| | ||||| |||||||| | ||| || |||| Sbjct 2257 TGTAGCCCGCCAGCACCTGCGCGATGGACATGACCTGTTCCTGGTACACGATCAGGCCGA 2198 Query 38243 AGGTCGGGTCCAGGATCTCGGCCAGCGGCTCCTCCACCTCGGGGTGGATCGGCGTGATCT 38302 ||||| | |||| || |||||||| ||| ||| ||||||||||||||||||| Sbjct 2197 AGGTCTCACCGAGGACGTCCTTGAGCGGCTCGGCCAGCTCCGGGTGGATCGGCGTGATCT 2138 Query 38303 CCTGCTGACCGTTCTTGCGGAGGGCGTAGTTCGTGTGCGAGCCCATGCCCATCGGACCCG 38362 ||||| | |||||||||||| |||||||| |||||| | | |||||||| |||| Sbjct 2137 CCTGCCGGCCGTTCTTGCGGTCGGCGTAGTCGTTGTGCGCGTTCGCCCCCATCGGGCCCG 2078 Query 38363 GACGGTACAGCGCGACGACGGCCGAGATGTCCTCGAACTGGTCCGGCTTCAGCAGGCGAA 38422 | |||||||||||| |||| || ||||||| |||||||| | ||| || |||| | Sbjct 2077 GGCGGTACAGCGCGCCGACCGCGGAGATGTGCTCGAACTCGCTGGGCGCCATGCGGCGCA 2018 Query 38423 GCAGGGAGCGCATCGCGCCGCCGTCGAGCTGGAAGACCGAGAGGGTGTCGCCCCTGGCCA 38482 |||| ||||||| |||||||||||||||||| || |||||||| || | || | Sbjct 2017 GCAGATCCCGCATCGGGCCGCCGTCGAGCTGGAACACACCCAGGGTGTCCCCGCGGGAGA 1958 Query 38483 GCAGCTCGTAGGTTGCCGGGTCGTCCAGCGGGATGTTCTCGATGTCGACGT---GCTCAC 38539 ||||||||||||| | ||||||| ||| || | || | ||||||| ||| | Sbjct 1957 GCAGCTCGTAGGTCTTCCGGTCGTCGAGCTCGACCTCGTCCAGGTCGACGGCGGGCTTGC 1898 Query 38540 CACGGTTGCGGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCCGA 38599 | |||| | ||||||||| | |||||| | | ||| |||||||| || ||||| | Sbjct 1897 C---GTTGAGCTCGATGTTCTCCAGGGCGTCGTCGAGGATGGTGAGGTTGCGCAGCCCCA 1841 Query 38600 GGAAGTCCATCTTCAGCAGGCCCAGGGCCTCGCAGCTCGGGTA-GTCGAACTGCGTGATC 38658 |||||||||||||||||||||| | || ||||||| || | ||||||||||||||| Sbjct 1840 GGAAGTCCATCTTCAGCAGGCCGATGGTCTCGCAGA-CGCCCATGTCGAACTGCGTGATG 1782 Query 38659 GTCACGCCGTCCG-CAGGCCGCACCCACGTAGGGATGTGGTCGACCAGCGGC-TCGTCAG 38716 || ||||||| | | || || | | ||||| ||||| || |||| ||| | Sbjct 1781 ATCGCGCCGTCGGACTCGCGGCGCTGGA-TCGGGATCACGTCGATCAACGGCGTCGAG-G 1724 Query 38717 ACATGATCACACCGGCTGCGTGCACGCCCATCTGCCGGACGAGTCCTTCGAGGCCACGCG 38776 |||||||||| || || |||||||| ||| |||||| ||||| |||||||| |||| Sbjct 1723 ACATGATCACGCCCGCGGCGTGCACACCCCACTGCCGCTTCAGTCCCTCGAGGCCCCGCG 1664 Query 38777 CGAGGTCGATGACCTCCTTCGCGTCCTTGTCGTTCTCGTACAGCGCCCGGATCTCGCCCG 38836 || ||||| || |||||| | | | ||| |||||| || || |||| |||| || Sbjct 1663 CGGTGTCGACGATCTCCTTGACCTGCGGGTCCGCCTCGTAGAGGGCGCGGACCTCGGTCG 1604 Query 38837 CCTCGTCGTAGCGCGGGTGCTCCGGGTTGGTGATGCCCTCCAGGGGCATCGACGCGCCCA 38896 ||||| ||| ||| |||| ||||| | ||||||| ||| || || | ||||| Sbjct 1603 CCTCGGAGTACCGCTTGTGCGACGGGTCGAAGATGCCCGACAGCGGGATGTCCTTGCCCA 1544 Query 38897 TCACGTCGGCCGGGTACGCCTTGGTCAGCTTC--TCGCCGACCTGGAAG---GGCTTGTC 38951 |||| ||| ||| ||||||| || | | ||| |||| | || |||| | | Sbjct 1543 TCACCGCGGGCGGCATGGCCTTGG--AGATGCGGTCGGCGACGGAGTAGCCGGGCTGGCC 1486 Query 38952 ---CAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGTCC-GTACGTCG 39007 |||||| || |||| |||||| |||||| |||||||||| ||| ||| || Sbjct 1485 GAACAGCACCCGCGCCGAGTCCTTGATCGCGGCCTTCGCCTTGATC-GTCGAGTAGGTGA 1427 Query 39008 CGATCTGTGCGACCTTGTCACTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCAC 39067 |||||| |||| | ||| ||||||||||||||||||||| ||||||| ||||| | Sbjct 1426 TGATCTGCGCGATCCGGTCCTCGCCGTACTTCTCGGTGACGTAGCGGATCATCTCGCCGC 1367 Query 39068 GGCGACGGTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGA 39127 | || || || |||||||| ||||| | ||||||||| || ||||| || |||||||||| Sbjct 1366 GCCGCCGCTCGTCGAAGTCCATGTCGATGTCGGGCATCGACACACGGTCCGGGTTCAGGA 1307 Query 39128 ACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACG 39187 ||||||||||||| ||| ||| |||| ||||| ||||||||||| || ||| |||| | Sbjct 1306 ACCGCTCGAAGATCAGCTTGTGCCGGATCGGGTCGAGGTCGGTGATGCCCAGGACGTAGG 1247 Query 39188 CGGCCAGCGAGCCAGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCG 39247 || |||||||||| ||||| ||||| || || |||||| | | |||| | ||| | Sbjct 1246 CGACCAGCGAGCCCGCCGCCGAGCCACGGCCGGGGCCGCAGCGGATGCCGACCGACTTGG 1187 Query 39248 CCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCA 39307 | ||||| ||| ||| || |||||||| ||| | ||||||| | |||| | Sbjct 1186 CGTGCTGGATGAGGTCCGCGGTCACCAGGAAGTAGCCGGGGTAGCCCATCTTGATGATGA 1127 Query 39308 TGTCGATCTCGTACTCGACCTGCGTGCGGTGCTCGTCGTCGTACCCACCGGGGAAGCG-- 39365 | ||| |||||| | | ||||| |||| || ||| | || ||||||| || Sbjct 1126 CGCCGACCTCGTAGTTGGCCTGCTGCCGGTACTTCTCGGTGACGCCGTCGGGGAACCGCA 1067 Query 39366 ---GCGGTCCATGCCGAT-GAGCACC-TGCTCGCGGAAGAACTGGCCCTCCGTCTGGCCC 39420 || |||| ||| | || | || || || | || ||| |||| |||| ||| Sbjct 1066 TGTGCAGTCC---CCGCTCGACCTCCTTGATC-AGCCAGGACT---CCTCGGTCTCCCCC 1014 Query 39421 TCGGGCACCGGGAAGCGGGGCATGAGGTTCTGGAACTCGAACATGCCGGTCG-TGTCGAC 39479 ||||| || || |||| ||||| |||| || || |||| ||| | Sbjct 1013 TCGGGGACGGGCGCCTTGGGCTGGAGGTCCTGG---CCGGTGGTG-AAGTCGATGTTGCA 958 Query 39480 CCGGTCGGCGATCTCCAGCGTGGT-CCGCATCCCCCACTCCCAGATGGGAGAGGAGTCGA 39538 || ||||||| ||||||| | |||| | | | | ||| || | | Sbjct 957 GCGCTCGGCGACGAGCAGCGTGTTGTCGCAGGC------CTCGGGGTGGATCGGGTCCCA 904 Query 39539 TGGCTG--CCATCTCGGCGGCCGACTTCAGGTAGTACCCCTCGCCCTCGAACCGGAACCG 39596 |||| |||||||||||| ||||| |||||| | ||| | |||||| |||||| Sbjct 903 GAGCTGGCGCATCTCGGCGGCGGACTTGAGGTAGAAGTCCTGCGCGTCGAACTTGAACCG 844 Query 39597 ATCCTCCTGGTAGAGGGTCGAGCCGGTCTGGACGCACAGCAGGGCGTCGTGGGCCGCAGC 39656 | | | ||||||| |||||||||||||||||| || | ||||| ||| | Sbjct 843 GTTCGGGTCCGCGAGGGTCTTGCCGGTCTGGACGCACAGGAGCACCTCGTGCGCCTTGGT 784 Query 39657 CTCCTCGACCCGCGTGTAGTGCGAGTCGTTGGTGACCA--CCGGGGTGAGACCGAGGCGC 39714 || || ||||||||| |||||| || | | ||||| || |||| Sbjct 783 GTCGTCCGGGTAGGTGTAGTGCAGGTCGTTCGTCGCGAGGCCGGG--CAGGTCGAG--CT 728 Query 39715 TGACC--GAGGCGGTAGAGGTCGTCGCGGACGCGCCGCTCGATCTCCAGGCCGTGGTCCA 39772 || || ||| ||| | ||||| || |||| ||| ||||||||| | ||||||||||| Sbjct 727 TGTCCTTGAGCCGGAACAGGTCCTCCTGGACCCGCTTCTCGATCTCGATGCCGTGGTCCA 668 Query 39773 TGATCTCCAGGAAGAAGTTGTCCTTCCCGAAGATCTCCCGCCACT---TCGCGGCCTCGG 39829 | | |||||||||||||||||||||||||||||| || || | | ||||||||| || Sbjct 667 TCAGCTCCAGGAAGAAGTTGTCCTTCCCGAAGATGTCGCGGTAGTCGCTCGCGGCCT-GG 609 Query 39830 CGACGGCCTCCTCGTACTGGCCGAGGTTGAGCCGGGTCATCACTGCGCCACCGGGGCATC 39889 | |||| | ||| | | | | | |||| || | || |||| ||||| | Sbjct 608 C--AGGCCGCGTCGAAGTCGTGCTGCTGGAGCAGGCGCGCGACCTCGCCGGACGGGCAGC 551 Query 39890 CCGTGGTGCCGATCAGGCCCTCTGCGTGCTCCGCCACCAGCTCGGCGTCCATGCGCGGGT 39949 |||| || |||||||||||| ||| || | ||| ||||||| |||||| ||||| Sbjct 550 CCGTCGTCGCGATCAGGCCCTTGCCGTACTTCTCCAGCAGCTCGCGGTCCATACGCGG-- 493 Query 39950 ACTTCCCG-AGCAGGCCCTC---GCTGTACGAGCGAGAGGAGAGCTTGAACAGGTTGTGC 40005 ||| | || | |||||| |||| | ||| ||||||||| ||| ||||||||| Sbjct 492 -CTTGTAGTAGTA-GCCCTCGAGGCTG-GCCAGC--GAGGAGAGCCGGAAGAGGTTGTGC 438 Query 40006 AGGCCGGTCTTGTTCGTGGCGAGCATGGTCATGTGGGTGTAGGCACCCCGACCGCTCACG 40065 | || | ||||| ||||||| |||||||||||||| || | | | Sbjct 437 ATCCCCTCCGTGTTCTCCGCGAGCAGCGTCATGTGGGTGTA--CA----------TGAGG 390 Query 40066 TCGTACCGCTTCTGCTCG--GGCG-TGCCCCACTGGACCCGCTCCTGGTCGGAACGGTGC 40122 ||| | || | |||| | || ||||| | | |||| | ||| || | Sbjct 389 TCG---GGGTTGTTCTCGCTGCCGTTGCCCAGCGCGGTGCGCTTGCGCTCGTGCCGCGAC 333 Query 40123 CCCGGTGCGACGTACGCCTCGATCCCGATGATGGGCTTGAC-CCCAGCGGCCTGCCCCTG 40181 || || |||| ||| |||| || |||||||| |||||||| | ||| | | || || Sbjct 332 CCGGGCGCGAGGTAGCCCTCCATGCCGATGATCGGCTTGACGTCGTGCGCCTTCGCCTTG 273 Query 40182 CGTGAAGAAGTCGTACGCACCATGCAGGTTGCCGTGGTCGGTCATCGCGAGGGCTCTCAT 40241 || |||| ||| | || || | | ||||||||||||||||||||||| ||| ||| Sbjct 272 CG-CCAGAACTCGAAGGCGCCGTAGACGTTGCCGTGGTCGGTCATCGCGATGGCCGGCAT 214 Query 40242 GCCCTGCGCCTTGGCCTCGGCGAACATGTCCTTCAGCCGAGCCGCCCCGTCGAGCAGGCT 40301 | ||| |||||||| ||||| ||| | ||||| || || ||||| |||| Sbjct 213 CTCGTGCTTGGCGGCCTCGGAGAACAGGTCGTCGAGCCGGGCGGCACCGTCCAGCATCGA 154 Query 40302 GTACTCGGAGTGGACATGCAGGTGAACGAAG 40332 | |||||| ||| ||||| ||||||||| Sbjct 153 GAACTCGGTGTGCGTGTGCAGATGAACGAAG 123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159707353691334