Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq1013 991 0.0 >seq1013 Length=3715 Score = 991 bits (1098), Expect = 0.0 Identities = 1928/2794 (69%), Gaps = 120/2794 (4%) Strand=Plus/Minus Query 38023 CATGCCCTTGCGGG--TGGCACCCGTG-GAGTCGAACGCACCGGCCTTGATCAAGGACTC 38079 || ||||||||||| |||| || | ||||||||||| || |||||||||| ||||| Sbjct 2847 CAGGCCCTTGCGGGAGTGGC---CGAGCGAGTCGAACGCGCCCGCCTTGATCAGCGACTC 2791 Query 38080 GACGGCTCGCTTGCTCACGTTCGCCTGAGTCG-CCGACCGGAGGAAGTCCGGCAGGGAGG 38138 |||| | |||| | | || | | |||| || || |||||||| | | | | Sbjct 2790 GACGACCTTCTTGTTGCAGA-CGACCGCGTCGACCTTGCGCAGGAAGTCGGAGAAGTCGA 2732 Query 38139 TGAACTTCCCCCAGGCTTCCCGCAGTTGGACGATCTCCTCGACCATGCTCTCGCCCACGT 38198 ||| |||||| | |||| ||||||| | ||||| | | | | || |||| Sbjct 2731 CGAAGTTCCCCTTCTCCCGCCGCGCGGCGACGATCGCGTCGACGACGTTGTGCCCGACGT 2672 Query 38199 TCTTCACGGCGGTCAGTCCGAAGCGGATCTCCCGCTCCCCGTTCGGGGTGAAGGAGGAGT 38258 | | | || || ||||| ||||| || || ||| ||| | |||| | Sbjct 2671 TGCGGATGCCGCCGAGGCCGAAACGGATGTCG---TCGCCGACCGGCGCGAAGTTGCGCA 2615 Query 38259 TCGAGACCGACACGTCGGGCGGCAGGACCCGAAGGCCCATGCGCCTGCACTCGCCGAGGT 38318 |||| | ||||||||||| |||||| | |||||| || | |||||| | |||| Sbjct 2614 CCGAGTCGTTGACGTCGGGCGGGAGGACCGTGATGCCCATCCGGCGGCACTCCGCCAGGT 2555 Query 38319 A---CGTGGCCATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACT 38375 | || |||| |||| ||||||||||| |||||||||||||||| | |||||||||| Sbjct 2554 AGACCGCGGCC---TTGTCCTTGTCGTCGCGCACCGAGGTGAGCACGCCGGCCATGTACT 2498 Query 38376 CGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGTCCGTACGCCGCAG 38435 |||||||||||| || ||| ||||| ||||| | ||| | | | ||||| || || | Sbjct 2497 CGGCCGGGTAGTTCGCCTTGAGGTAGGCCGTCCAGTACGACACCACGCCGTAGGCGGCGG 2438 Query 38436 AGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCCGGA 38495 |||| || |||||||||||| ||| ||| || | || | |||||| | | | || Sbjct 2437 AGTGGGCGCGGTTGAAGGCGTAGTCGGAGAACGGGAGCAGGATGTCCCAGAGAGTCTTGA 2378 Query 38496 TGGCAGCGTCCGAGTAGCCTCGCTCGCTTGCTCCCTTCTG-GAAGTTCACGAACTCCTTG 38554 || || | |||||||| || ||| | || | | |||| || |||||||| Sbjct 2377 CCGCGGCCGCGGAGTAGCCGTTGTC-CTTCATGCCCTGGGCGAAGCCGGCGTACTCCTTG 2319 Query 38555 GCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTGACCGAGG 38614 |||| | ||| ||||||||||||||| ||||| ||||| ||||| ||||| ||||| Sbjct 2318 TCCAGGATCTCCTTCTTCTTCTTGCCCATCGCGCGGCGGAGCAGGTCCGCCTGGCCGAGC 2259 Query 38615 GTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCG 38674 ||||| || ||||| | |||||| | ||||| |||||||| | ||| || ||| Sbjct 2258 GTGTAGCCCGCCAGCACCTGCGCGATGGACATGACCTGTTCCTGGTACACGATCAGGCCG 2199 Query 38675 AAGGTCGGGTCCAGGATCTCGGCCAGCGGCTCCTCCACCTCGGGGTGGATCGGCGTGATC 38734 |||||| | |||| || |||||||| ||| ||| |||||||||||||||||| Sbjct 2198 AAGGTCTCACCGAGGACGTCCTTGAGCGGCTCGGCCAGCTCCGGGTGGATCGGCGTGATC 2139 Query 38735 TCCTGCTGCCCGTTCTTGCGGAGGGCGTAGTTCGTGTGCGAGCCCATGCCCATCGGACCC 38794 |||||| | |||||||||||| |||||||| |||||| | | |||||||| ||| Sbjct 2138 TCCTGCCGGCCGTTCTTGCGGTCGGCGTAGTCGTTGTGCGCGTTCGCCCCCATCGGGCCC 2079 Query 38795 GGACGGTACAGCGCCACGACGGCGGAGATGTCCTCGAACTGGTCCGGCTTCAGCAGGCGG 38854 || ||||||||||| |||| |||||||||| |||||||| | ||| || |||| Sbjct 2078 GGGCGGTACAGCGCGCCGACCGCGGAGATGTGCTCGAACTCGCTGGGCGCCATGCGGCGC 2019 Query 38855 AGCAGGGAGCGCATCGCGCCGCCGTCGAGCTGGAACACCGAGAGCGTGTCGCCCCTGGCC 38914 ||||| ||||||| ||||||||||||||||||||| || ||||| || | || Sbjct 2018 AGCAGATCCCGCATCGGGCCGCCGTCGAGCTGGAACACACCCAGGGTGTCCCCGCGGGAG 1959 Query 38915 AGCAGCTCGTACGTCGCGGGGTCATCCAGCGGGATGTTCTCGATGTCGACGT---GCTCA 38971 ||||||||||| ||| |||| || ||| || | || | ||||||| ||| Sbjct 1958 AGCAGCTCGTAGGTCTTCCGGTCGTCGAGCTCGACCTCGTCCAGGTCGACGGCGGGCTTG 1899 Query 38972 CCACGGTTGCGGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCCG 39031 || |||| | ||||||||| | |||||| | | ||| |||||||| || ||||| Sbjct 1898 CC---GTTGAGCTCGATGTTCTCCAGGGCGTCGTCGAGGATGGTGAGGTTGCGCAGCCCC 1842 Query 39032 AGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAGCTCGGGTA-GTCGAACTGCGTGAT 39090 ||||||||||||||||||||||| | | ||||||| || | ||||||||||||||| Sbjct 1841 AGGAAGTCCATCTTCAGCAGGCCGATGGTCTCGCAGA-CGCCCATGTCGAACTGCGTGAT 1783 Query 39091 CGTTACGCCGTCCG-CAGGCCGCACCCACGTCGGGATGTGATCGACCAGCGGC-TCGTCG 39148 | ||||||| | | || || | ||||||| |||| || |||| ||| | Sbjct 1782 GATCGCGCCGTCGGACTCGCGGCGCTGGA-TCGGGATCACGTCGATCAACGGCGTCGA-G 1725 Query 39149 GACATGATCACACCGGCTGCGTGCACGCCCATCTGCCGGACGAGACCTTCGAGGCCACGC 39208 ||||||||||| || || |||||||| ||| |||||| || || |||||||| ||| Sbjct 1724 GACATGATCACGCCCGCGGCGTGCACACCCCACTGCCGCTTCAGTCCCTCGAGGCCCCGC 1665 Query 39209 GCGAGGTCAATGACCTCCTTCGCGTCCTTGTCGTTCTCGTACAGCGCCCGGATCTCGCCC 39268 ||| ||| | || |||||| | | | ||| |||||| || || |||| |||| | Sbjct 1664 GCGGTGTCGACGATCTCCTTGACCTGCGGGTCCGCCTCGTAGAGGGCGCGGACCTCGGTC 1605 Query 39269 GCCTCGTCGTAGCGCGGGTGCTCCGGGTTGGTGATGCCCTCCAGGGGCATCGACGCGCCC 39328 |||||| ||| ||| |||| ||||| | ||||||| ||| || || | |||| Sbjct 1604 GCCTCGGAGTACCGCTTGTGCGACGGGTCGAAGATGCCCGACAGCGGGATGTCCTTGCCC 1545 Query 39329 ATCACATCGGCCGGGTACGCCTTGGTCAGCTTC--TCGCCGACCTGAAAG---GGCTTGT 39383 ||||| ||| ||| ||||||| || | | ||| |||| || |||| | Sbjct 1544 ATCACCGCGGGCGGCATGGCCTTGG--AGATGCGGTCGGCGACGGAGTAGCCGGGCTGGC 1487 Query 39384 C---CAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGGGCCTTGATCCTGCCGTACGTCG 39440 | |||||| || |||| |||||| |||||| ||||||||| | ||| || Sbjct 1486 CGAACAGCACCCGCGCCGAGTCCTTGATCGCGGCCTTCGCCTTGATCGTCGAGTAGGTGA 1427 Query 39441 CGATCTGTGCGACCTTGTCGCTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCAC 39500 |||||| |||| | ||| ||||||||||||||||||||| ||||||| ||||| | Sbjct 1426 TGATCTGCGCGATCCGGTCCTCGCCGTACTTCTCGGTGACGTAGCGGATCATCTCGCCGC 1367 Query 39501 GGCGACGGTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGA 39560 | || || || |||||||| ||||| | ||||||||| || || || || |||||||||| Sbjct 1366 GCCGCCGCTCGTCGAAGTCCATGTCGATGTCGGGCATCGACACACGGTCCGGGTTCAGGA 1307 Query 39561 ACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACG 39620 ||||||||||||| ||| ||| |||| ||||| ||||||||||| || ||| |||| | Sbjct 1306 ACCGCTCGAAGATCAGCTTGTGCCGGATCGGGTCGAGGTCGGTGATGCCCAGGACGTAGG 1247 Query 39621 CGGCCAGCGAGCCAGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCG 39680 || |||||||||| ||||| |||||||| || |||||| | | ||| | ||| | Sbjct 1246 CGACCAGCGAGCCCGCCGCCGAGCCACGGCCGGGGCCGCAGCGGATGCCGACCGACTTGG 1187 Query 39681 CCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCA 39740 | ||||| ||| ||| || |||||||| ||| | ||||||| | |||| | Sbjct 1186 CGTGCTGGATGAGGTCCGCGGTCACCAGGAAGTAGCCGGGGTAGCCCATCTTGATGATGA 1127 Query 39741 TGTCGATCTCGTAGTCGACCTGCGTTCGGTGCTCGTCGTCGTACCCCTGCGGGAAGCGAC 39800 | ||| |||||||| | ||||| |||| || ||| | || | ||||| || Sbjct 1126 CGCCGACCTCGTAGTTGGCCTGCTGCCGGTACTTCTCGGTGACGCCGTCGGGGAACCGCA 1067 Query 39801 GGTCCA--TGCCGAT-GAGCACC-TGCTCGCGGAAGAACTGGCCCTCCGTCTGGCCTTCG 39856 || || ||| | || | || || || | || ||| |||| |||| || ||| Sbjct 1066 TGTGCAGTCCCCGCTCGACCTCCTTGATC-AGCCAGGACT---CCTCGGTCTCCCCCTCG 1011 Query 39857 GGCACCGGGAAGCGGGGCATGAGGTTCTGGAACTCGAACATGCCGGTCG-TGTCGACCCG 39915 || || || |||| ||||| |||| || || |||| ||| | || Sbjct 1010 GGGACGGGCGCCTTGGGCTGGAGGTCCTGG---CCGGTGGTG-AAGTCGATGTTGCAGCG 955 Query 39916 GTCAGCGATCTCCAGCGTGGTG-CGCATCCCCC----ACGACCAGATGTCGGAGCTGTCG 39970 || |||| ||||||| || |||| || | || | | | | |||||| || Sbjct 954 CTCGGCGACGAGCAGCGTGTTGTCGCAGGCCTCGGGGTGGATCGGGTCCCAGAGCTGGCG 895 Query 39971 ATGGCTGCCATCTCGGCGGCCGACTTCAGGTAGTA-CCCTTCGCCCTCGAACCGGAAGCG 40029 |||||||||||| ||||| |||||| | ||| || | |||||| ||| || Sbjct 894 --------CATCTCGGCGGCGGACTTGAGGTAGAAGTCCTGCG-CGTCGAACTTGAACCG 844 Query 40030 ATCCTCCTGGTAGAGGGACGAGCCGGTCTGGACGCACAGCAGGGCGTCGTGGGCCGCAGC 40089 | | | ||||| | |||||||||||||||||| || | ||||| ||| | Sbjct 843 GTTCGGGTCCGCGAGGGTCTTGCCGGTCTGGACGCACAGGAGCACCTCGTGCGCCTTGGT 784 Query 40090 CTCCTCGACCCGCGTGTAGTGCGAGTCGTTGGTGACCA--CCGGGGTGAGACCGAGGCGC 40147 || || ||||||||| |||||| || | | ||||| || |||| Sbjct 783 GTCGTCCGGGTAGGTGTAGTGCAGGTCGTTCGTCGCGAGGCCGGG--CAGGTCGAG--CT 728 Query 40148 TGACC--GAGGCGGTAGAGGTCGTCGCGGACGCGCCGCTCGATCTCCAGGCCGTGGTCCA 40205 || || ||| ||| | ||||| || |||| ||| ||||||||| | ||||||||||| Sbjct 727 TGTCCTTGAGCCGGAACAGGTCCTCCTGGACCCGCTTCTCGATCTCGATGCCGTGGTCCA 668 Query 40206 TGATCTCCAGGAAGAAGTTGTCCTTCCCGAAGATCTCCCGCCACT---TCGCAGCCTCGG 40262 | | |||||||||||||||||||||||||||||| || || | | |||| |||| | Sbjct 667 TCAGCTCCAGGAAGAAGTTGTCCTTCCCGAAGATGTCGCGGTAGTCGCTCGCGGCCTGGC 608 Query 40263 CGACGGCCTC---CTCGTACTGACCGAGGTTGAGCCGGGTCATCACAGCACCACCGGGGC 40319 | | || || |||| ||| ||| | | || | | || | | || |||| Sbjct 607 AGGCCGCGTCGAAGTCGTGCTGCTGGAGCAGGCG-CGCGACCTCGCCGGAC-----GGGC 554 Query 40320 ATCCCGTGGTGCCGATCAGGCCCTCTGCGTGCTCGGCCACCAGCTCGGCGTCCATGCGCG 40379 | ||||| || |||||||||||| ||| || ||| ||||||| |||||| |||| Sbjct 553 AGCCCGTCGTCGCGATCAGGCCCTTGCCGTACTTCTCCAGCAGCTCGCGGTCCATACGCG 494 Query 40380 GGTACTTCCCG-AGCAGACCCTC---GCTGTACGAGCGAGAGGAGAGCTTGAACAGGTTG 40435 | ||| | || || ||||| |||| | ||| ||||||||| ||| |||||| Sbjct 493 G---CTTGTAGTAGTAG-CCCTCGAGGCTG-GCCAGC--GAGGAGAGCCGGAAGAGGTTG 441 Query 40436 TGCAGGCCGGTCTTGTTCGTCGCGAGCATGGTCATGTGGGTGTAGGCACCCCGACCGCTC 40495 |||| || | ||||| |||||||| |||||||||||||| || | Sbjct 440 TGCATCCCCTCCGTGTTCTCCGCGAGCAGCGTCATGTGGGTGTA--CA----------TG 393 Query 40496 ACGTCGTACCGCTTCTGCTCG--GGCG-TGCCCCACTGGACCCGCTCCTGGTCGGAGCGC 40552 | |||| | || | |||| | || ||||| | | |||| | ||| ||| Sbjct 392 AGGTCG---GGGTTGTTCTCGCTGCCGTTGCCCAGCGCGGTGCGCTTGCGCTCGTGCCGC 336 Query 40553 GAGCCCGGCGCGACGTACGCCTCGATCCCGATGATGGGCTTGAC-CCCAGCGGCCTGCCC 40611 || || ||||||| ||| |||| || |||||||| |||||||| | ||| | | || Sbjct 335 GACCCGGGCGCGAGGTAGCCCTCCATGCCGATGATCGGCTTGACGTCGTGCGCCTTCGCC 276 Query 40612 CTGCGTGAAGAAGTCGTACGCACCGTGCAGGTTGCCGTGGTCGGTCATCGCGAGGGCCTT 40671 |||| |||| ||| | || |||| | ||||||||||||||||||||||| |||| Sbjct 275 TTGCG-CCAGAACTCGAAGGCGCCGTAGACGTTGCCGTGGTCGGTCATCGCGATGGCCGG 217 Query 40672 CATGCCCTGCGCCTTGGCCTCGGCGAACATGTCCTTCAGTCGAGCCGCCCCGTCGAGAAG 40731 ||| | ||| |||||||| ||||| ||| | || || || || ||||| || | Sbjct 216 CATCTCGTGCTTGGCGGCCTCGGAGAACAGGTCGTCGAGCCGGGCGGCACCGTCCAGCAT 157 Query 40732 GCTGTACTCGGAGTGGACATGCAGGTGGACGAAG 40765 | |||||| ||| ||||| || |||||| Sbjct 156 CGAGAACTCGGTGTGCGTGTGCAGATGAACGAAG 123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160232127909550