Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq2625 107 1e-18 seq487 89.7 4e-13 seq4017 86.0 4e-12 >seq2625 Length=346021 Score = 107 bits (118), Expect = 1e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || || ||||| ||||| || ||||| || || | || ||||| || Sbjct 279964 AAGATGCAGATCTTCGTGAAGACTCTGACAGGGAAGACGATCACTTTGGAGGTCGAGAGT 280023 Query 27847 ACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 |||| | || |||| ||||| ||||| ||||| || || | || | Sbjct 280024 TCCGATACCATCGACAAC--GTCAAGAGCAAAATCCAGGACAAGGAGGGCATCCCCCCTG 280081 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| ||||| ||||| ||||| || ||| | || || | ||||| ||| |||| | Sbjct 280082 ACCAGCAGCGGTTGATTTTCGCCGGCAAGCAACTCGAGGATGGTCGCAGTTTGGCCGACT 280141 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||| || ||||||||| ||||||||||| || | ||||||| || Sbjct 280142 ACAATATCCAGAAGGAGAGCACTCTGCATTTGGTTCTGAGACTGCGTGGAGG 280193 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || || || || || ||||| || || |||| ||||||||| | Sbjct 280195 ATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACCATCACTCTTGAGGTCGAAAGCTCT 280254 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || |||| ||||| || || ||||| || || || || |||| || | Sbjct 280255 GATACGATCGACAAT--GTGAAGACGAAAATTCAAGATAAGGAGGGCATTCCCCCTGACC 280312 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| ||||| ||||| ||||| |||||| | || |||| |||| || |||| |||| Sbjct 280313 AGCAGCGGTTGATTTTCGCCGGTAAACAACTCGAAGACGGTCGCACGCTGGCCGACTACA 280372 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||||||| |||||||||| | || ||| | |||| || || Sbjct 280373 ACATCCAAAAAGAGTCCACTTTGCATCTTGTGTTGAGGCTGCGAGGAGG 280421 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| || || |||||||| ||||| ||| || | || || |||||| || Sbjct 281107 ATGCAGATTTTCGTCAAGACTCTTACAGGGAAGACTATCACCCTGGAGGTTGAAAGCTCC 281166 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || |||| || || || || || || ||||| |||| || | Sbjct 281167 GATACTATCGACAAC--GTGAAGACTAAGATCCAAGATAAGGAAGGAATTCCACCAGATC 281224 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| ||||| ||||||||||| || || ||||| |||| || | || | || |||| Sbjct 281225 AGCAGCGGTTGATTTTTGCCGGTAAGCAGTTGGAGGACGGCCGAACGCTGGCTGACTACA 281284 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| |||| | ||| |||| ||| | ||| | || || Sbjct 281285 ACATCCAAAAGGAGTCCACTCTCCATCTGGTGTTGAGATTGAGGGGAGG 281333 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||| || | || || || || || |||| || || ||| | Sbjct 281791 ATGCAGATTTTTGTGAAGACATTGACCGGTAAGACCATCACTCTTGAGGTGGAGAGCTCT 281850 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | ||||| |||| || |||| || | | || ||||| ||||| | || || Sbjct 281851 GACACGATTGACAA-CGTGAAAACGAAGATTCAG--GACAAGGAAGGCATCCCTCCAGAT 281907 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| |||| |||||||| ||||| ||| | || |||| || | |||| |||| ||| Sbjct 281908 CAGCAGAGGTTGATTTTTGCAGGAAAGCAACTTGAGGACGGTCGTACCTTGGCCGACTAC 281967 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 ||||| ||||| ||| || | |||||||| ||| Sbjct 281968 AACATTCAAAAGGAGTCTACCCTCCATTTGGTCTTG 282003 >seq487 Length=466406 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| || || || ||||| || |||||| || || | || || || ||| | Sbjct 183332 AATGCAAATCTTCGTCAAGACTCTGACGGGGAAAACCATCACTCTGGAAGTGGAGAGCTC 183391 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || ||||| || ||| ||||| ||||| || || |||| || Sbjct 183392 TGACACCATCGACAAT--GTGAAAGCCAAAATCCAGGACAAGGAGGGAATTCCTCCCGAC 183449 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || || || || || || || || |||| || | || | || |||||||| Sbjct 183450 CAGCAGCGATTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACACTGGCCGATTAC 183509 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| ||||||||| || |||||| |||| |||||| |||| || || Sbjct 183510 AACATTCAAAAAGAGTCGACGTTGCATCTGGTGTTGCGTCTGCGAGGAGG 183559 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||||||||| || || || || ||| || | || || |||||| || Sbjct 176580 ATGCAGATTTTTGTGAAAACACTCACCGGTAAGACTATCACTTTAGAAGTAGAAAGCTCC 176639 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | || |||||| ||||| ||||| || || |||| || | Sbjct 176640 GATACCATTGATAAC--GTCAAAGCCAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 176697 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 |||| || | || |||||||| || || | || |||| || | |||| | || ||| Sbjct 176698 AGCAGAGGCTGATCTTTGCCGGTAAGCAGCTCGAGGACGGCCGAACTCTTG-CAGACTAC 176756 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| ||| |||| | |||||||| | || ||| | || || Sbjct 176757 AACATCCAAAAGGAGTCCACTCTTCATTTGGTGCTTCGGTTGAGGGGAGG 176806 >seq4017 Length=874442 Score = 86.0 bits (94), Expect = 4e-12 Identities = 153/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || |||||||| || | || ||||| || || |||| ||||||||| Sbjct 471972 AAGATGCAGATCTTTGTGAAGACATTGACGGGGAAGACCATCACTCTTGAGGTCGAAAGC 472031 Query 27847 ACCGA--CGATGTACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATG 27903 |||| |||| ||||| | | | || || | | || ||||| || ||| |||| Sbjct 472032 TCCGATACGATCGACAAT-GTTAAGACCAAGATTCAG--GACAAGGAGGGTATTCCTCCC 472088 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || | ||||| ||||| || ||| | || || | | | ||| | ||| Sbjct 472089 GACCAGCAGAGGCTGATTTTCGCCGGCAAGCAACTCGAGGATGGGAGGACATTGGCTGAT 472148 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || ||||||||||| ||| || ||||| ||||| ||| Sbjct 472149 TATAACATCCAAAAGGAGTCTACATTGCACTTGGTCTTG 472187 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || ||||| || | || ||||| ||| || | || ||||||||| | Sbjct 473571 ATGCAGATCTTCGTGAAGACCTTGACCGGGAAGACTATCACTCTCGAGGTCGAAAGCTCT 473630 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| |||||| || || ||||| ||||| |||| || | Sbjct 473631 GACACCATCGACAAT--GTCAAAACCAAGATCCAGGACAAGGAAGGAATTCCTCCCGATC 473688 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | || || ||||| ||||| || |||| || | ||| | | || | ||||||| Sbjct 473689 AGCAGAGATTGATCTTTGCAGGAAAGCAGCTGGAAGATGGACGAACCCTGGCGGATTACA 473748 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | ||||||||||| ||| ||||| | ||| || | |||| || || Sbjct 473749 ATATCCAAAAAGAATCAACTCTGCATCTTGTTCTGAGGCTGCGAGGTGG 473797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355844457528999