Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq487 114 1e-20 seq2625 98.7 9e-16 seq4073 87.8 2e-12 >seq487 Length=466406 Score = 114 bits (126), Expect = 1e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||| | || ||||||| ||| | ||| ||||||||| || || |||||||| Sbjct 183559 CCTCCTCGCAGACGCAACACCAGATGCAACGTCGACTCTTTTTGAATGTTGTAATCGGCC 183500 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 ||||| || | || || ||||| ||||| || || || | ||||||||||||| || Sbjct 183499 AGTGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCGGGAGGA 183440 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCC 39234 | | ||| |||||| |||||| ||| | | | | || || ||| |||| Sbjct 183439 ATTCCCTCCTTGTCCTGGATTTTGGCTTTCACATTGTCGATGGTGTCAGAGCT---CTCC 183383 Query 39235 ACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| ||||| |||| |||||||| || || || ||||||||||| Sbjct 183382 ACTTCCAGAGTGATGGTTTTCCCCGTCAGAGTCTTGACGAAGATTTGCAT 183333 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || || || | |||||| || || ||| ||| || || || || ||||| ||| Sbjct 182324 CCTCCCCTCAACCGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCTGCA 182265 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| || ||||| || || ||||| || | | ||||||||| | ||| Sbjct 182264 AGGGTGCGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGG 182205 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||| || ||| || || || | | | | |||||||| ||| || Sbjct 182204 ATTCCCTCCTTATCCTGAATCTTGGCCTTCACATTGTCGATGGTATCGCTGCTCTCGACC 182145 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || | |||||| | |||||||||||||| || |||||||| ||||| || Sbjct 182144 TCGAGCGTGATGGTCTTTCCCGTCAGCGTCTTCACAAAGATCTGCATGTT 182095 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| || || | ||||||||| || ||| ||| ||||| || || || || || Sbjct 182780 CCTCCTCTCAAACGGAGCACCAAATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCTGCG 182721 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 || || || | || || ||||| || || || || || || | ||||||||| ||||| Sbjct 182720 AGAGTGCGGCCATCTTCGAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGGTCTGGTGGA 182661 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCA 39235 | || || |||||| |||||| || | ||| | |||| || ||| |||| Sbjct 182660 ATCCCT-TCCTTGTCCTGGATTTTTGCCTTCA-CGTTGTCCACGGTGTCGGAGCTTTCCA 182603 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || | ||||| | ||||| || || || || || ||||||||||| Sbjct 182602 CCTCGAGAGTGATCGTCTTTCCTGTGAGGGTCTTCACGAAGATTTGCAT 182554 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | || | ||||||||| || ||| ||| ||||| || || || || || Sbjct 183008 CCTCCCCTGAGACGAAGCACCAAATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCTGCG 182949 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||| || || || || || | | ||||| || | || Sbjct 182948 AGGGTACGACCATCTTCGAGCTGCTTACCAGCGAAGATCAATCTTTGCTGATCAGGAGGA 182889 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCAC 39236 | || ||| |||||| ||| | | | || | ||| | | | || ||| |||||| Sbjct 182888 ATGCCCTCCTTGTCC-TGAATCTTAGCTTTAACGTTGTCGATAGTGTCGGAGCTCTCCAC 182830 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| |||| || ||||||||||| || ||||| ||||| Sbjct 182829 TTCCAGAGTGATCGTTTTGCCGGTCAGCGTTTTTACGAAGATCTGCAT 182782 >seq2625 Length=346021 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| || |||||||| || || ||||| || ||||| | | || | || || Sbjct 280175 ACCAAATGCAGAGTGCTCTCCTTCTGGATATTGTAGTCGGCCAAACTGCGACCATCCTCG 280116 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 || || ||||| || || || | ||||||||||| | ||| | || ||| |||||| | Sbjct 280115 AGTTGCTTGCCGGCGAAAATCAACCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 280056 Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||||| |||| ||| | | | |||||| ||| || |||| ||||| | || Sbjct 280055 ATTTTGCTCTTGA-CGTTGTCGATGGTATCGGAACTCTCGACCTCCAAAGTGATCGTCTT 279997 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || ||||| || || || ||||| |||||||| Sbjct 279996 CCCTGTCAGAGTCTTCACGAAGATCTGCATCTT 279964 >seq4073 Length=488838 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 ||||||||||| || || ||| || || || || ||||| || || || || | || Sbjct 173700 AACACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCCAGAGTGCGACCATCC 173759 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 || ||||| ||||| ||||| || | | ||||||||| | || | | ||| ||||| Sbjct 173760 TCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATCCCCTCCTTGTCT 173819 Query 39193 ATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 || || ||| | | | | ||||||| |||||| |||| |||||| | Sbjct 173820 TGAATCTTAACTTTCACATTATCGATCGTATCGGAGCTCTCCACCTCCAACGTGATGGTC 173879 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 || ||||||||||| || || || || |||||| Sbjct 173880 TTCCCCGTCAGCGTCTTCACGAATATCTGCATC 173912 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | || | || | ||| || ||| |||||| || || |||||||| ||| Sbjct 172773 CCTCCTCTAAGACGGAGGACAAGATGCAGGGTGGACTCTTTCTGAATGTTATAATCTGCA 172832 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || ||||| | || || || || || || || || || | | |||||| |||| || Sbjct 172833 AGAGTTCGCCCATCTTCGAGTTGCTTACCGGCGAAGATCAACCTCTGCTGATCGGGAGGA 172892 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGA---CTC 39233 | | || |||||| || ||| ||||| ||| | | | || || ||| ||| Sbjct 172893 ATACCTTCCTTGTCCTGAATCTTCGCTTTGA-CGTTGTCGATGGTGTC---CGAGCTCTC 172948 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| ||||| | || || ||||| ||||| || ||||||||||| Sbjct 172949 GACCTCCAGAGTGATGGTCTTGCCGGTCAGTGTTTTCACGAAGATTTGCAT 172999 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | || | || | ||| || ||| |||||| || || |||||||| || Sbjct 173001 CCTCCTCTGAGACGGAGGACAAGATGCAGGGTGGACTCTTTCTGAATGTTATAATCTGCC 173060 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || ||||| | || || ||||| || || || || || | | ||||||||||| || Sbjct 173061 AGAGTTCGCCCATCTTCGAGCTGCTTACCGGCGAAGATCAACCTCTGCTGGTCGGGAGGA 173120 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCGACTC 39233 | | || |||||| || ||| ||||| ||| | | | || || ||| ||| Sbjct 173121 ATACCTTCCTTGTCCTGAATCTTCGCTTTGA-CGTTGTCGATGGTGTCCGAGCT---CTC 173176 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| ||||| | || || |||| ||||| || ||||||||||| Sbjct 173177 GACCTCCAGAGTGATGGTCTTGCCGGTCAATGTTTTCACGAAGATTTGCAT 173227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429523942445081