Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq470 95.1 1e-14 >seq470 Length=504015 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 29723 ACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGC 29782 |||||||| |||||||| |||||||| |||||| ||| ||||| |||| || || | Sbjct 117213 ACGTGAGCAATCATGTAGGTGAGGAGGGAGTAGGAGGCTATGTTGTAGGGTACTCCTAAT 117154 Query 29783 CCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAAC 29842 ||||| || | ||| | ||||| | || || || |||||||||| | |||||||||| Sbjct 117153 CCCATATCACATGAGCGTTGGTACATTTGACATGATAGCTCTCCGTTGGCCACGTAAAAC 117094 Query 29843 TG 29844 || Sbjct 117093 TG 117092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406142721378382