Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_030917.1 Length=93577 Score E Sequences producing significant alignments: (Bits) Value seq2905 156 3e-33 >seq2905 Length=1000 Score = 156 bits (172), Expect = 3e-33 Identities = 189/256 (74%), Gaps = 6/256 (2%) Strand=Plus/Minus Query 55102 CGCCGAGTTCGGCGGTCGGGTCTGCTACCAGAGCTGGGACAAGCCCAACCCGAAGACGGC 55161 ||| ||||||| ||| || | |||||||||| ||| ||||||| |||||||||||||| Sbjct 700 CGCGGAGTTCGCCGGCCGCGCCTGCTACCAGTCGTGGAACAAGCCGAACCCGAAGACGGC 641 Query 55162 CACCAACCAGGGCTACATCGAGAACATCCAGGAGCAGCGCCACTTCAGCGTGCTCGAGCA 55221 || ||| |||| |||||| |||||| |||| | ||| || |||||||||||| Sbjct 640 GACGAACGAGGGGTACATCCGCCACATCCTGGAGGTCGGGCACCTCTCCGTGCTCGAGCA 581 Query 55222 CAGCTCGGCCAGCTTCTACATCGAAGGTGTCTCCCGGTCGCTCACCCACGAGTTGGTGCG 55281 | |||| | | | ||||| | || || |||||||| || ||||||||| | | || Sbjct 580 CGGCTCCGTCTCCGTCTACGTGACCGGCGTGTCCCGGTCCCTGACCCACGAGATCATCCG 521 Query 55282 CCACCGC---CACTTCTCGTACTCGCAACTGTCGCAGCGCTACGTCGACTCCAGCGATGT 55338 |||||| | | | || ||||| |||||||||||||||||| ||||| | Sbjct 520 GCACCGCGGGCTCAGCCCG---TCGCAGCTGTCGCAGCGCTACGTCCCGGAGAGCGACGC 464 Query 55339 CGCGTTCGTGCTGCCG 55354 |||||||||| ||||| Sbjct 463 CGCGTTCGTGATGCCG 448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299306508298466