Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_030940.1 Length=32637 Score E Sequences producing significant alignments: (Bits) Value seq1742 253 4e-63 seq759 141 2e-29 >seq1742 Length=4467 Score = 253 bits (280), Expect = 4e-63 Identities = 374/531 (70%), Gaps = 11/531 (2%) Strand=Plus/Minus Query 28453 ATGACATGGGCACCCGTCACCATGCGCTGGCCCGCACAGACGACCCGCTGGCTGGACGAC 28512 |||| |||||||| || |||||||||||||||| ||| | || | ||| ||| ||| Sbjct 551 ATGAACTGGGCACCGGTGACCATGCGCTGGCCCGAGCAGGCCACGCAGTGGATGGGCGAG 492 Query 28513 CTGGGCGCGGCCCAGCAGCTCGCCAGCGGCGAGCTGGCGGGCACCGCCGAGCGCCTGCGC 28572 ||| |||||| || | || ||| |||||||||||| |||||| |||| ||| Sbjct 491 CTGTCAGCGGCCAAGGATCTGGCCGGCGGCGAGCTGGTTAACACCGCTAAGCGTCTGGCA 432 Query 28573 GGGCTCCAGGACCTGGCCACCACCAACCCGGGGCCGGTCGCCGGCGCCGCCAAGGCGGCC 28632 ||||| | | | || ||| |||||||||||||||||| | | ||||||||| | || Sbjct 431 GGGCTGGACGGCATGACCAGCACCAACCCGGGGCCGGTGGGTGACGCCGCCAAAGGCGCG 372 Query 28633 ATCACAGCCGGGCGCAGCGCCATGGCCAG-CACACTGGGCGAGGTACCGGCGTGCCTCGC 28691 ||| ||||| ||| ||| |||| | || | ||||||| | ||||||||||| || Sbjct 371 ATCGAGGCCGGCCGCGCCGCATTGGCTGGGCAGA-TGGGCGAAGCGCCGGCGTGCCTGGC 313 Query 28692 NNNNNNNNNNNNNNNNNNCGGCGTCGGCCAAGGCCAGGGCAACCAGCGATTCCTGTCCGC 28751 || |||||||| |||| ||| ||||||| || ||||| || Sbjct 312 CGTGACGCCGTTCCAAAGTGGAGTCGGCCAGGGCCGTGGCCACCAGCGCTTTCTGTCTGC 253 Query 28752 GCCGAACCTGCTGCAGCAACTGGCCGACAAGCTG-----CTGCAGCCGCAGCG--CGACG 28804 ||||||| |||||||||||||||||| ||| ||| | |||| || || |||| Sbjct 252 GCCGAACTTGCTGCAGCAACTGGCCGCCAAACTGGTCGACGTCAGCGACAACGGCCGACC 193 Query 28805 ACCAGG--AACAGTACGCCCTGGTCCTGCTGTTCCTCGGCACCCGCTACGACCAGTTGGC 28862 | || || ||||| ||| ||| ||||||| ||||| ||| |||||||| || Sbjct 192 GGCTGGCCCTCAATACGCGCTGTCGCTGATGTTCCTGGGCACGCGCCTGGACCAGTTTGC 133 Query 28863 CGCGACGCTGGCCCGCTTCAATGCCCTGCTGCCGGTCCCTGACCTGCAGCGCGCCGAGCG 28922 || ||| ||||| || |||||||| ||| ||||| | |||||||| ||| || || || Sbjct 132 CGAGACCCTGGCGCGGTTCAATGCGCTGTTGCCGATTCCTGACCTAGTGCGGGCTGAACG 73 Query 28923 CCGCGCCGCGAGCCTGGCCCGCCTGGAACTGGAAAAGTGGATCATGCCCAG 28973 || || || |||| | |||||||| || |||||| || ||||| Sbjct 72 TCGTGCGCGGAACCTGTCGCGCCTGGAGACCGACAAGTGGGAGATCCCCAG 22 Score = 181 bits (200), Expect = 2e-41 Identities = 248/344 (72%), Gaps = 2/344 (1%) Strand=Plus/Minus Query 22362 ACCATGGAAGGCGGCGAGGCAGGCGGGCTCTACAAAGCGTTCTTCGAAAACGTCAGCGCC 22421 ||||||||||||||||| || ||||| | |||||| |||||||| |||||| | ||||| Sbjct 4459 ACCATGGAAGGCGGCGACGCGGGCGGACGCTACAAGGCGTTCTTTGAAAACCTGGGCGCC 4400 Query 22422 GCCCAGGACAAGCTGGGCATGAAGTTCACCGACGCCGGCGGCCGGCTGCTGCCCATCATG 22481 ||| ||| || ||||| |||||||||||||| || ||| ||||||||| || Sbjct 4399 GCCTCGGAAAAAATGGGCCTGAAGTTCACCGACTCCAACGGTAAAGCGCTGCCCATGCTG 4340 Query 22482 CAGATCCTGGACAAGCTGCAGGTGAAGTTCGGCCAGTTGACCAAGCAGAGCGACCTG-GA 22540 |||||| ||||||||||||||| ||| | || | ||||| ||| || || | | Sbjct 4339 CAGATCATGGACAAGCTGCAGGGCAAGCTAGGTGACCTGACC-AGCGCGTCGGCCAGCGC 4281 Query 22541 CGCGATCACCGGCGCGTTTGGCGGCGAGGCGGCGCGGATGATCGTCACCCTGCTGAAGGA 22600 | | | | | |||||||||||| |||| || | | | |||| | ||||| ||||| Sbjct 4280 CAAGCTGATGGACGCGTTTGGCGGGGAGGGCGCACAGGTCATCGGCTCCCTGGCCAAGGA 4221 Query 22601 CACCGGCGCCCTGGCCAACAACCTGGACCAGCTGGGAAAAGTGAAGGGGATGGAGCGCGC 22660 ||||| |||| ||| | ||||| ||||||| || ||| || ||||| ||| Sbjct 4220 CACCGATCGCCTGCGCAATGGCTTGGACAAGCTGGGCAAGGTGCGCGGCCTGGAGGACGC 4161 Query 22661 CGAGCAGATGGCGCGGGCGATGGTCGATCCCTGGCAGCAGCTCG 22704 | | ||||| ||| |||||||| || ||||| ||| ||| Sbjct 4160 ACAAAACATGGCCATGGCCATGGTCGACCCGTGGCAACAGTTCG 4117 >seq759 Length=305 Score = 141 bits (156), Expect = 2e-29 Identities = 206/285 (72%), Gaps = 12/285 (4%) Strand=Plus/Minus Query 16620 CCCCGCCCTATTCGAGTG-TCACGCATGAGCTTTTCCGGCAAACCCACCAACGTGATCCA 16678 |||||||||||| ||| | ||| ||||||||||||| || |||||||||| | | | | Sbjct 294 CCCCGCCCTATTTGAGCGGTCA-GCATGAGCTTTTCAGGTAAACCCACCACCCTTGTGGA 236 Query 16679 GCAGGCCATCCCCAACGACGGGTTCTGGCCTGAACTGCAGGTGGCCGAGTTCCAGCGGCT 16738 | ||| ||| || ||||| |||||||| | || | |||| |||||||||| | Sbjct 235 ACTGGCGATCGAGAATGACGGCTTCTGGCCGAACCTCGATGTGGGCGAGTTCCAGAAGGG 176 Query 16739 GTACCGCCTGCCGGCGGAATTCCTGCTTGATCTGCTGGTTGACGGCG----TGACCACTG 16794 || |||||||||||||||| |||| | || |||||| ||||| ||||||| | Sbjct 175 TTATCGCCTGCCGGCGGAATACCTGGTGGAGCTGCTG----ACGGCTGAATTGACCACGG 120 Query 16795 CCCGGGCCGAGGTGAACCAGGACCTGGCCAAGCGCAA-GCGCGCCTGGCAGACCGCCGGG 16853 | | ||||||| ||| ||| |||||| | |||| ||||| ||||||| | || Sbjct 119 CGATGACCGAGGTCAACGGCGACTTGGCCACGTGCAAAGCGCGT-TGGCAGAACCAAGGT 61 Query 16854 GTCACTCGGCTGGAAACCGCAGATCCGCAGGTGCTGCCGGATCGC 16898 ||||| ||||| | || || || |||||||||||| ||| Sbjct 60 GTCACCACCTTGGAATCTGCTGACCCTATGGTGCTGCCGGAGCGC 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104311675241606