Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_031060.1 Length=52726 Score E Sequences producing significant alignments: (Bits) Value seq1506 87.8 6e-13 seq2905 84.2 7e-12 >seq1506 Length=1050 Score = 87.8 bits (96), Expect = 6e-13 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 17380 ACCTGTTCCCGTTCTCTCCTGCGAAGGAGGGTCCGTTCTCGGGATCCGGATACACCGATG 17439 |||||||||||||||| || |||||| ||| |||||||| || ||||| ||| | Sbjct 674 ACCTGTTCCCGTTCTCCCCGGCGAAGACGGGACCGTTCTCCGGCTCCGGCTACGTCACCC 733 Query 17440 AGTCCGGTAAGGCGCTCACTCGCGACTTCGC 17470 | ||||||||||||||||| |||||||||| Sbjct 734 ACTCCGGTAAGGCGCTCACCGGCGACTTCGC 764 >seq2905 Length=1000 Score = 84.2 bits (92), Expect = 7e-12 Identities = 104/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 31266 GTAGAACGTGGCTGAGGCGTGCTCGAGCACCGACTCGTGGCCGACGTCGAGGATGTGCTT 31325 ||||| | | | ||| ||||||||||||| || ||| ||||| || |||||||| Sbjct 562 GTAGACGGAGACGGAGCCGTGCTCGAGCACGGAGAGGTGCCCGACCTCCAGGATGTGGCG 621 Query 31326 GATGTAGTCCTGGTTC-TCACGCGTGGCCGGGTTCGGGCGGTGGAACGACCGGTAGCAGT 31384 |||||| ||| |||| || | ||| ||||||||| || ||||| |||||||| Sbjct 622 GATGTACCCCTCGTTCGTCGC-CGTCTTCGGGTTCGGCTTGTTCCACGACTGGTAGCAGG 680 Query 31385 TCCGGCCTGCGAACTCCGCG 31404 ||||| |||||||||||| Sbjct 681 CGCGGCCGGCGAACTCCGCG 700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 168593317130272