Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq1013 955 0.0 >seq1013 Length=3715 Score = 955 bits (1058), Expect = 0.0 Identities = 1914/2790 (69%), Gaps = 114/2790 (4%) Strand=Plus/Minus Query 38675 CAGACCCTTGCGGGTAGCTCCGGTCGAGTCGAAGGCACCGGCCTTGATCAAGGACTCGAT 38734 ||| |||||||||| ||| ||||||||| || || |||||||||| ||||||| Sbjct 2847 CAGGCCCTTGCGGGAGTGGCCGAGCGAGTCGAACGCGCCCGCCTTGATCAGCGACTCGAC 2788 Query 38735 GGCACGCTTGCTCACGGTCGCCTGAGTCGCAGCCTT---CAGGAAGTCCGGCAGGGAAGT 38791 | | |||| | | | || | | |||| |||| ||||||||| | ||||| Sbjct 2787 GACCTTCTTGTTG-CAGACGACCGCGTCGA--CCTTGCGCAGGAAGTCGGA----GAAGT 2735 Query 38792 ----GAACTTCCCCCAGGCTTCCCGGAGTTCGGCGA---TCTCCTGGACCATGCCCTCGC 38844 ||| |||||| ||||| | |||||| || | | ||| | | | | Sbjct 2734 CGACGAAGTTCCCCTTC---TCCCGCCGCGCGGCGACGATCGCGTCGACGACGTTGTGCC 2678 Query 38845 CCACGTTCTTCACGGCGGTCAGCCCGAAGCGGATCTCCGTCTTCCCGTTCGGGGTGAAGG 38904 | ||||| | | || || ||||| ||||| || ||| ||| ||| | |||| Sbjct 2677 CGACGTTGCGGATGCCGCCGAGGCCGAAACGGATGTC-GTCG--CCGACCGGCGCGAAGT 2621 Query 38905 AGCTGTTCGAGACCGACACGTCGGGCGGCAGGAC-GTGAAGTCCCATCCGCCGTGCCTCG 38963 || |||| | ||||||||||| ||||| |||| | |||||||| || ||| Sbjct 2620 TGCGCACCGAGTCGTTGACGTCGGGCGGGAGGACCGTGATG-CCCATCCGGCGGCACTCC 2562 Query 38964 CCGAGGTA---CGTGGCCATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCC 39020 | ||||| || |||| |||| ||||||||||| |||||||||||||||| | ||| Sbjct 2561 GCCAGGTAGACCGCGGCC---TTGTCCTTGTCGTCGCGCACCGAGGTGAGCACGCCGGCC 2505 Query 39021 ATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGACCGTAC 39080 ||||||||||||||||||| || ||| ||||| ||||| | ||| | | | ||||| Sbjct 2504 ATGTACTCGGCCGGGTAGTTCGCCTTGAGGTAGGCCGTCCAGTACGACACCACGCCGTAG 2445 Query 39081 GCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACC 39140 || || ||||| || |||||||||||| ||| ||| || | || | |||||| | Sbjct 2444 GCGGCGGAGTGGGCGCGGTTGAAGGCGTAGTCGGAGAACGGGAGCAGGATGTCCCAGAGA 2385 Query 39141 GCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGAAC 39200 | || || || | | |||||||| || | |||| |||| || || Sbjct 2384 GTCTTGACCGCGGCCGCGGAGTAGCCGTTGTCCTTCATGCCCTGGGCGAAGCCGGCGTAC 2325 Query 39201 TCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCTCGGCGGAGAAGGTCGGCCTGA 39260 |||||| |||| | ||| ||||||||||||||| || |||||||| ||||| ||||| Sbjct 2324 TCCTTGTCCAGGATCTCCTTCTTCTTCTTGCCCATCGCGCGGCGGAGCAGGTCCGCCTGG 2265 Query 39261 CCCAGGCTGTACCCAGCGAGGATCTGTGCCGCCTTCTGCACCTGCTCCTGGTAGATGACC 39320 || || |||| || || || | ||| || | ||||| |||||||| | || | Sbjct 2264 CCGAGCGTGTAGCCCGCCAGCACCTGCGCGATGGACATGACCTGTTCCTGGTACACGATC 2205 Query 39321 AGCCCGTAGGTCGGCCCCAGGATCTCGGCAAGCGGCTCCTCCACCTCGGGGTGGATCGGC 39380 || ||| ||||| || |||| || |||||||| ||| ||| |||||||||||| Sbjct 2204 AGGCCGAAGGTCTCACCGAGGACGTCCTTGAGCGGCTCGGCCAGCTCCGGGTGGATCGGC 2145 Query 39381 GTGATCGCCTGCTGCCCGTTCTTGCGGAGGGCGTAGTTCGTGTGCGAGCCCACGCCCATC 39440 |||||| ||||| | |||||||||||| |||||||| |||||| | | | |||||| Sbjct 2144 GTGATCTCCTGCCGGCCGTTCTTGCGGTCGGCGTAGTCGTTGTGCGCGTTCGCCCCCATC 2085 Query 39441 GGACCCGGACGGTACAGCGCGACGACGGCGCTGATGTCCTCGAAGTTGTCCGGCTTCAGC 39500 || ||||| |||||||||||| |||| ||| ||||| |||||| | | ||| || Sbjct 2084 GGGCCCGGGCGGTACAGCGCGCCGACCGCGGAGATGTGCTCGAACTCGCTGGGCGCCATG 2025 Query 39501 AGGCGGAGCAGTGAGCGCATCGCGCCGCCGTCGAGCTGGAAGACCGAGAGCGTGTCGCCC 39560 |||| ||||| ||||||| |||||||||||||||||| || || ||||| || Sbjct 2024 CGGCGCAGCAGATCCCGCATCGGGCCGCCGTCGAGCTGGAACACACCCAGGGTGTCCCCG 1965 Query 39561 CTGGCCAGCAGCTCGTAGGTAGCAACGTCGTCCAGCGGGATGTTCTCCAGGTCGACGT-- 39618 | || |||||||||||||| |||||| ||| || | |||||||||||| Sbjct 1964 CGGGAGAGCAGCTCGTAGGTCTTCCGGTCGTCGAGCTCGACCTCGTCCAGGTCGACGGCG 1905 Query 39619 -GCTCCCCACGGTTG-GCGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCG 39676 ||| || |||| || || |||||||| | |||||| | | ||| |||||||| || Sbjct 1904 GGCTTGCC---GTTGAGCTCG-ATGTTCTCCAGGGCGTCGTCGAGGATGGTGAGGTTGCG 1849 Query 39677 GAGCCCGAGGAAGTCCATCTTCACCGCGCCCAGGCTCTCGCACTGGGGGTAGTCCCACTG 39736 ||||| |||||||||||||||| | ||| | | ||||||| | ||| |||| Sbjct 1848 CAGCCCCAGGAAGTCCATCTTCAGCAGGCCGATGGTCTCGCAGACGCCCATGTCGAACTG 1789 Query 39737 CGTCACGGTCACGCCGTCCGCAGGGCGGACCCACACCGGGAGGTGATCGACCAACGGC-T 39795 ||| | | || ||||||| | |||| | | ||||| |||| ||||||| | Sbjct 1788 CGTGATGATCGCGCCGTCGGACTCGCGGCGCTGGATCGGGATCACGTCGATCAACGGCGT 1729 Query 39796 CGTTGGACATGATCACACCGGCCGCGTGAACGCCCATCTGCCGGACGAGACCTTCGAGCC 39855 || |||||||||||| || || ||||| || ||| |||||| || || ||||| | Sbjct 1728 CGA-GGACATGATCACGCCCGCGGCGTGCACACCCCACTGCCGCTTCAGTCCCTCGAGGC 1670 Query 39856 CGAGCGCAGTGTCGATGACCTGCTTCGAGTCCGGGTCGTTCTCGTACAGCCCACGGATCT 39915 | |||| ||||||| || || ||| | |||||| |||||| || | |||| || Sbjct 1669 CCCGCGCGGTGTCGACGATCTCCTTGACCTGCGGGTCCGCCTCGTAGAGGGCGCGGACCT 1610 Query 39916 CGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGAAGATGCCCTCCAGGGGCATCGAGT 39975 || ||||||| ||| ||| |||| ||||| |||||||||| ||| || || | Sbjct 1609 CGGTCGCCTCGGAGTACCGCTTGTGCGACGGGTCGAAGATGCCCGACAGCGGGATGTCCT 1550 Query 39976 TGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTC--TCGCCGACCTGGAAG---GG 40030 |||||||||| ||| ||| ||||||| || | | ||| |||| | || || Sbjct 1549 TGCCCATCACCGCGGGCGGCATGGCCTTGG--AGATGCGGTCGGCGACGGAGTAGCCGGG 1492 Query 40031 CTTGTC---CAGCACGCGCGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATC--CGACCG 40085 || | | |||||| ||||||| |||||| |||||| |||||||||| ||| | Sbjct 1491 CTGGCCGAACAGCACCCGCGCCGAGTCCTTGATCGCGGCCTTCGCCTTGATCGTCGA--G 1434 Query 40086 AAGGTCCCGATCTGTGCGACCTTGTCCGCCCCGTACTTCTCGGTGACGTACCTGATCACG 40145 |||| |||||| |||| | |||| | |||||||||||||||||||| | ||||| Sbjct 1433 TAGGTGATGATCTGCGCGATCCGGTCCTCGCCGTACTTCTCGGTGACGTAGCGGATCATC 1374 Query 40146 TCGCCCCGTCGCCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGG 40205 ||||| || ||||| || |||||||| ||||| | ||||||||| ||||| || || ||| Sbjct 1373 TCGCCGCGCCGCCGCTCGTCGAAGTCCATGTCGATGTCGGGCATCGACACACGGTCCGGG 1314 Query 40206 TTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGCCGAGG 40265 |||||||||||||||||||| ||| |||| |||| ||||| ||||| |||||||| ||| Sbjct 1313 TTCAGGAACCGCTCGAAGATCAGCTTGTGCCGGATCGGGTCGAGGTCGGTGATGCCCAGG 1254 Query 40266 CAGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTC 40325 ||||||||||||||| || || ||||||||||| ||||| ||| | | |||| | Sbjct 1253 ACGTAGGCGACCAGCGAGCCCGCCGCCGAGCCACGGCCGGGGCCGCAGCGGATGCCGACC 1194 Query 40326 TCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAACCCCAGCTGG 40385 |||||| ||||| ||| ||| |||||||||||| ||| | |||| || | Sbjct 1193 GACTTGGCGTGCTGGATGAGGTCCGCGGTCACCAGGAAGTAGCCGGGGTAGCCCATCTTG 1134 Query 40386 ATGATCATGTCGATCTCGTACTGAAGCTGCTTGCCATGCTCGTAGTCGGT---CCCGTTC 40442 ||||| | | ||| |||||| | |||| |||| | | | ||||| |||| Sbjct 1133 ATGATGACGCCGACCTCGTAGTTGGCCTGC-TGCC--GGTACTTCTCGGTGACGCCGTCG 1077 Query 40443 GGGAACCGTCGAGCTGCA--CCACGGTGGACCTCGTCCTCGAACCACGTAACCTCGGTGT 40500 |||||||| | |||| || || | |||||| | | ||| | ||||||| | Sbjct 1076 GGGAACCG--CATGTGCAGTCCCCGCTCGACCTCCTTGATCAGCCAGGACTCCTCGGTCT 1019 Query 40501 GACCCTCGGGCACGGGGAAGCGGGGCATGAGGTCGGTGTGCTCGAACATGCCAGTCG-TG 40559 |||||||| ||||| |||| |||||| || || || ||||| || Sbjct 1018 CCCCCTCGGGGACGGGCGCCTTGGGCTGGAGGTC---CTGGCCGGTGGTG-AAGTCGATG 963 Query 40560 TCGACGCGCTCGGCGATCTCCAGCGTGGT-CCGCATCCCCCACTCCCAGATGGGAGAGGA 40618 | | ||||||||||| ||||||| | |||| || | ||| || | Sbjct 962 TTGCAGCGCTCGGCGACGAGCAGCGTGTTGTCGCAGGCCTC-GGGGTGGATCGGGTCCCA 904 Query 40619 GTCGATGGCCGCCATCTCGGCGGCCGACTTGATGTAGTA-CCCGGAGCCCTCGAACCGGA 40677 | | |||| |||||||||||| ||||||| |||| | || | | | |||||| || Sbjct 903 G-AGCTGGC--GCATCTCGGCGGCGGACTTGAGGTAGAAGTCCTGCG-CGTCGAACTTGA 848 Query 40678 AGCGGTTCGGGTTGTCGATCGTCGTGCCGGTCTGGACGCAGAGCAGAGCGTCGTGCGCGG 40737 | |||||||||| ||| ||| |||||||||||||||| || || | |||||||| Sbjct 847 ACCGGTTCGGGTCCGCGAGGGTCTTGCCGGTCTGGACGCACAGGAGCACCTCGTGCGCCT 788 Query 40738 TGCTCTCCTCGGCCGTGACGTAGTGCGAGTCGTTCGTGACCACGGGGGTGAGCGCGAG-- 40795 || | || || | | ||||||| ||||||||| | | | || || |||| Sbjct 787 TGGTGTCGTCCGGGTAGGTGTAGTGCAGGTCGTTCGTCGCGAGGCCGGGCAGGTCGAGCT 728 Query 40796 -GTGCTTGCCCAGCCGGTAGAGGTCGTCGCGGACACGCCGCTCGATCTCCAGGCCGTGGT 40854 || |||| |||||| | ||||| || |||| ||| ||||||||| | |||||||| Sbjct 727 TGTCCTTG---AGCCGGAACAGGTCCTCCTGGACCCGCTTCTCGATCTCGATGCCGTGGT 671 Query 40855 CCATGATCTCCAGGAAGTACCGGTCCCGACCGAAGACCTCCAGGTACCGGC---CAGCCT 40911 |||| | |||||||||| | |||| ||||||| || |||| || | |||| Sbjct 670 CCATCAGCTCCAGGAAGAAGTTGTCCTTCCCGAAGATGTCGCGGTAGTCGCTCGCGGCCT 611 Query 40912 CGGCAACGGCCTCGTCGTACTGCCCGAGGTTGAGCCGGGTCATGATCGCACCGCCAGGGC 40971 |||| |||| ||||| | | | | |||| || | || | | ||| |||| Sbjct 610 -GGCA--GGCCGCGTCGAAGTCGTGCTGCTGGAGCAGGCGCGCGACCTCGCCGGACGGGC 554 Query 40972 ATCCCGTGGTGACGATCAGGCCCTCGTTGTGCTCGGCGACCAGGTCGAAGTCCATGCGCG 41031 | ||||| || |||||||||||| | || || | | ||| ||| |||||| |||| Sbjct 553 AGCCCGTCGTCGCGATCAGGCCCTTGCCGTACTTCTCCAGCAGCTCGCGGTCCATACGCG 494 Query 41032 GGTACTTCCCG-AGCAGGCCCTC----CTGGTACGAGCGGGAGCTGAGCTTCATGAGGTT 41086 | ||| | || | |||||| |||| | ||| ||| |||| | |||||| Sbjct 493 G---CTTGTAGTAGTA-GCCCTCGAGGCTGG--CCAGC--GAGGAGAGCCGGAAGAGGTT 442 Query 41087 GTGCAGGCCGGTCTTGTTCTCCGCGAGGATCGTGAGGTGCGTGTACGCACCGCGACCGCT 41146 ||||| || | ||||||||||||| | ||| | ||| |||||| | Sbjct 441 GTGCATCCCCTCCGTGTTCTCCGCGAGCAGCGTCATGTGGGTGTAC------------AT 394 Query 41147 CACGTCGTAACGCTTCTGGTCCTCGGTGCCCCACTTGACGCGCTCCTGGTCGAAGCGCGA 41206 | |||| |||| | || ||||| | | ||||| | ||| ||||| Sbjct 393 GAGGTCGGGGTTGTTCTCGCTGCCGTTGCCCAGCGCGGTGCGCTTGCGCTCGTGCCGCGA 334 Query 41207 GCCCGGAGCCATGTACGCCTCGATGCCGATGATCGGCTTGACCCCAGCGGCCTGAGCCGT 41266 || || || | ||| |||| |||||||||||||||||||| | |||| ||| | Sbjct 333 CCCGGGCGCGAGGTAGCCCTCCATGCCGATGATCGGCTTGACGTCGTGCGCCTTCGCCTT 274 Query 41267 GGTGAAGAAGTCGTGGGCACCGTGCAGGTTGCCGTGGTCAGTGACTGCGACTGCCGGGGA 41326 | |||| ||| ||| |||| | |||||||||||| || | |||| ||||| Sbjct 273 GCGCCAGAACTCGAAGGCGCCGTAGACGTTGCCGTGGTCGGTCATCGCGATGGCCGGCAT 214 Query 41327 GCCCTGTCGGGCAACCTCGGCGACCATTTGCTTCATCCGAGCGGCCCCGTCGAGGAGCGA 41386 | || ||| |||||| || || | | | ||| ||||| ||||| || | ||| Sbjct 213 CTCGTGCTTGGCGGCCTCGGAGAACAGGTCGTCGAGCCGGGCGGCACCGTCCAGCATCGA 154 Query 41387 GTACTCGGAGTGGTTGTGGAGGTGGACGAA 41416 | |||||| ||| |||| || || ||||| Sbjct 153 GAACTCGGTGTGCGTGTGCAGATGAACGAA 124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160132932782936