Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq2878 232 8e-56 seq467 168 8e-37 seq3282 150 2e-31 seq1308 116 5e-21 seq3761 100 4e-16 seq3792 98.7 1e-15 seq164 96.9 4e-15 seq38 87.8 2e-12 seq2371 84.2 3e-11 seq2746 82.4 9e-11 >seq2878 Length=397857 Score = 232 bits (256), Expect = 8e-56 Identities = 344/485 (71%), Gaps = 2/485 (0%) Strand=Plus/Plus Query 186131 TAATTTTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCT 186190 ||||||| | || || || || || ||||| || | | | | ||||||| | || | Sbjct 140288 TAATTTTTTAACTGCCGCTGTTTCTACTCCAGCAAATAGTTTAGCTCATTCTTTACTATT 140347 Query 186191 ACTTTGGGGTCCTGAGTCTCAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTG 186250 | | ||||| ||||| | ||||| ||| | | || |||| |||| | || || | || Sbjct 140348 ATTATGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCAATTAGGTGGTTTATG 140407 Query 186251 GAATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGA 186310 || |||||| || || || || || ||||| | ||||| || ||| | ||||| ||||| Sbjct 140408 GACTTTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTATGTTACGACAATTTGA 140467 Query 186311 AATCAGTCG-TCTCGTAGGTATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCG 186369 | | | | ||| | | | ||||| || ||||| ||||| |||||||| ||||| | Sbjct 140468 ACTTGCTAGATCTGTTCAAT-TACGTCCTTATAATGCAATTGCGTTTTCTGGACCTATTG 140526 Query 186370 CTGTCTTTGTTAGTGTATTCCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTC 186429 |||| ||||| ||| || || || || ||| | ||||| || ||||| || || | Sbjct 140527 CTGTTTTTGTATCTGTTTTTCTTATTTATCCTTTAGGACAATCAGGTTGGTTTTTTGCAC 140586 Query 186430 CCTCCTTTGGAGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACT 186489 | ||||| || || ||||| |||||||| | | || | ||||| || || |||| Sbjct 140587 CTAGTTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTCAAGGCTTTCATAACT 140646 Query 186490 GGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGT 186549 |||| || || |||||||| ||||||||||| || || | | |||| |||||| | | Sbjct 140647 GGACTTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAGGTGCTGCTCTTTTAT 140706 Query 186550 CAGCAATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACA 186609 ||||| || |||| |||||| || |||||| | | ||||||||| || ||||||| Sbjct 140707 GCGCAATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGATGGTGATGGTGCAAACA 140766 Query 186610 CATTC 186614 ||||| Sbjct 140767 CATTC 140771 >seq467 Length=265627 Score = 168 bits (186), Expect = 8e-37 Identities = 147/183 (80%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 184005 TGCTCTTGGTGTTAGCACTATGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCAT 184064 |||| | ||| | ||||||||||| || ||| | |||||||||||||| ||||| || | Sbjct 211280 TGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGT 211221 Query 184065 CATTGATGGTCAAGGTCGTGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCT 184124 |||| ||||||||||||| | ||||| ||||| || || ||||||||||| || Sbjct 211220 TGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCT 211161 Query 184125 TGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTGC 184184 ||| |||||||| ||||| || ||||| ||||||||||||||||| ||| | ||||||| Sbjct 211160 TGGTATGGAAGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGT 211101 Query 184185 TGA 184187 ||| Sbjct 211100 TGA 211098 >seq3282 Length=366234 Score = 150 bits (166), Expect = 2e-31 Identities = 134/168 (80%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 183991 GGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTTAACCTGAATGGTTTTAAC 184050 || || |||||||||||| | ||| | ||||||||||| || ||| | |||||||||||| Sbjct 190886 GGTATTTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAAC 190945 Query 184051 TTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACACCTGGGCAGACGTTCTC 184110 || ||||| || | |||| ||||||||||||| | ||||| ||||| || || || Sbjct 190946 TTTAACCAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATC 191005 Query 184111 AACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCAC 184158 ||||||||| ||||| |||||||| ||||| || ||||| |||||| Sbjct 191006 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCAC 191053 >seq1308 Length=500924 Score = 116 bits (128), Expect = 5e-21 Identities = 94/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 184074 TCAAGGTCGTGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGA 184133 |||||||||||| | ||||| ||||| || || ||||||||||| ||||| ||||| Sbjct 59770 TCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGA 59711 Query 184134 AGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 184187 ||| ||||| || ||||| ||||||||||||||||| ||| | ||||||| ||| Sbjct 59710 AGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 59657 >seq3761 Length=231418 Score = 100 bits (110), Expect = 4e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 183344 CCGTTGCTGGGTCGCTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTT 183403 |||| |||| || || | || ||||| |||||||| |||||||| || ||||| | | Sbjct 108171 CCGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCT 108230 Query 183404 CCAACGCAATTGGACTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGC 183463 | || || || | |||||||| || || |||||||| || || | ||||| ||| Sbjct 108231 CTGCAGCTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGT 108290 Query 183464 TGTATAACGGTGGTCCTTACCAACT 183488 |||| ||||||||||||||| |||| Sbjct 108291 TGTACAACGGTGGTCCTTACGAACT 108315 >seq3792 Length=366655 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 183549 TTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGC 183608 ||||||| | ||||||||||||||||| |||||| ||| || || ||||||||||| Sbjct 281814 TTACCGTTTAGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGCTGC 281873 Query 183609 AACCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCT 183668 || ||||| ||| || |||| ||| | |||||||| ||| || |||||||| | Sbjct 281874 TACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTTT 281933 Query 183669 GGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCA 183707 |||||| ||| || || || | ||| ||| |||| Sbjct 281934 AGGTATCTCTGGTACTTTCAATTTCATGACTGTTCTCCA 281972 >seq164 Length=700310 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 186798 CGTGCTTATGACTTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACG 186857 ||||| || || ||||| || || | | |||||||||||||| || || || || Sbjct 563863 CGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAATTTGAAACT 563922 Query 186858 TTCTATACCAAGAATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGAT 186917 || ||||| || ||||| |||| ||||||||| | | || ||||||||| | ||| Sbjct 563923 TTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCAGCTCAAGAT 563982 Query 186918 CAACCACATGAAAACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAAC 186968 || || |||||||| ||||||| || || || || ||||| | || ||| Sbjct 563983 CAGCCTCATGAAAATCTTGTATTCCCAGAGGAGGTTCTGCCACGTGGAAAC 564033 >seq38 Length=546171 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 183969 CCTTG-CTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGG 184027 ||||| ||||||||||||| || || | |||||||||||| | ||| | |||||||||| Sbjct 81962 CCTTGGCTGCTTGGCCAGTTGTAGGATTTTGGTTTACTGCTTTAGGTTTCAGCACTATGG 81903 Query 184028 CATTTAACCTGAATGGTTTTAACTT 184052 || ||| |||||||||||||||| Sbjct 81902 ATTTCAACTTGAATGGTTTTAACTT 81878 >seq2371 Length=186017 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 183289 TTCATCGTTGCCTTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCCGTT 183348 ||||| |||| || | || ||||||||||| || || ||||| ||||| ||||| || Sbjct 41006 TTCATTATTGCTTTTATTGCAGCTCCTCCTGTAGATATTGACGGTATCCGTGAACCTGTA 41065 Query 183349 GCTGGGTCGCTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCT 183399 |||| || || | || ||||| |||||||| |||||||| || ||||| Sbjct 41066 TCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCT 41116 >seq2746 Length=455122 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 183953 GTTCTCTTCACTTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTG 184012 ||||| | || |||||| | | |||||||||||| || || || ||||||||||| | | Sbjct 385640 GTTCTTTACATTTCTTCTTGGTTGCTTGGCCAGTTGTAGGTATTTGGTTTACTGCGTTAG 385699 Query 184013 GTGTTAGCACTATGGCATTTAACCTGAATGGTTTTAACTT 184052 || | ||||||||||| || ||| | |||||||| ||| Sbjct 385700 GTATCAGCACTATGGCTTTCAACTTACCTGGTTTTAGCTT 385739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622038231184440