Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_031238.1 Length=53411 Score E Sequences producing significant alignments: (Bits) Value seq2905 89.7 2e-13 >seq2905 Length=1000 Score = 89.7 bits (98), Expect = 2e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 32804 GCCGTGCTCCAGCACCGATTCGTGGCCCACGTCGAGGATGTGCTCTAGATAGGTCTCGTT 32863 ||||||||| ||||| || ||| || || || |||||||| | || |||||| Sbjct 577 GCCGTGCTCGAGCACGGAGAGGTGCCCGACCTCCAGGATGTGGCGGATGTACCCCTCGTT 636 Query 32864 GGTGGCCGTGGCCGGGTTCGGACGGTTGAACGACTGGTAGCAGGCGCGGCCTGCGAACTC 32923 || ||||| ||||||||| ||| |||||||||||||||||||||| |||||||| Sbjct 637 CGTCGCCGTCTTCGGGTTCGGCTTGTTCCACGACTGGTAGCAGGCGCGGCCGGCGAACTC 696 Query 32924 AGCG 32927 ||| Sbjct 697 CGCG 700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170785209444162