Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq2878 266 4e-66 seq467 141 1e-28 seq3282 127 2e-24 seq3761 122 1e-22 seq3792 114 1e-20 seq1308 107 2e-18 seq164 107 2e-18 seq2371 104 3e-17 seq595 104 3e-17 seq470 93.3 5e-14 >seq2878 Length=397857 Score = 266 bits (294), Expect = 4e-66 Identities = 351/484 (73%), Gaps = 2/484 (0%) Strand=Plus/Plus Query 165324 AACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTT 165383 || ||| | ||||| || ||||||||||||||| | | | | ||||||| | || | Sbjct 140289 AATTTTTTAACTGCCGCTGTTTCTACTCCAGCAAATAGTTTAGCTCATTCTTTACTATTA 140348 Query 165384 CTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGG 165443 ||||||| ||||| | ||||| || || | || ||||||||| | || || | ||| Sbjct 140349 TTATGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCAATTAGGTGGTTTATGG 140408 Query 165444 ACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAA 165503 |||||||| || || || || || ||||| | ||||| || ||| | || || |||||| Sbjct 140409 ACTTTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTATGTTACGACAATTTGAA 140468 Query 165504 CTGGCACGA-CTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGC 165562 || || || || || | | |||||||| ||||| ||||| || ||||| |||||||| Sbjct 140469 CTTGCTAGATCTGTTCAAT-TACGTCCTTATAATGCAATTGCGTTTTCTGGACCTATTGC 140527 Query 165563 TGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACC 165622 ||| || || |||||||||||| |||||| | |||||||| ||||| || ||||| Sbjct 140528 TGTTTTTGTATCTGTTTTTCTTATTTATCCTTTAGGACAATCAGGTTGGTTTTTTGCACC 140587 Query 165623 GTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTG 165682 || || || || ||||| || |||| | || || | ||||| || |||||||| Sbjct 140588 TAGTTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTCAAGGCTTTCATAACTG 140647 Query 165683 GACGCTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTC 165742 ||| | || || || || |||||||| || || || | ||||| | || | | | Sbjct 140648 GACTTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAGGTGCTGCTCTTTTATG 140707 Query 165743 TGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACAC 165802 || ||||| |||| ||| || ||||||||||| | |||||||||||| |||||||| Sbjct 140708 CGCAATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGATGGTGATGGTGCAAACAC 140767 Query 165803 TTTC 165806 ||| Sbjct 140768 ATTC 140771 >seq467 Length=265627 Score = 141 bits (156), Expect = 1e-28 Identities = 141/183 (77%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 164737 TGCTCTGGGCGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCAT 164796 |||| | || | ||||| ||||| |||||| | || ||||| ||||| ||||| || | Sbjct 211280 TGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGT 211221 Query 164797 CATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCT 164856 | || |||| |||||||| | ||||| ||||| || || ||||||||||| || Sbjct 211220 TGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCT 211161 Query 164857 GGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTGC 164916 || |||||||| ||||| || ||||| ||||||||||||||||| ||| | ||||||| Sbjct 211160 TGGTATGGAAGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGT 211101 Query 164917 TGA 164919 ||| Sbjct 211100 TGA 211098 >seq3282 Length=366234 Score = 127 bits (140), Expect = 2e-24 Identities = 129/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 164723 GGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAACCTCAACGGTTTCAAC 164782 ||||| |||||||||||| | || | ||||| ||||| |||||| | || ||||| ||| Sbjct 190886 GGTATTTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAAC 190945 Query 164783 TTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTC 164842 || ||||| || | | || |||| |||||||| | ||||| ||||| || || || Sbjct 190946 TTTAACCAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATC 191005 Query 164843 AACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGCTCAC 164890 ||||||||| || || |||||||| ||||| || ||||| |||||| Sbjct 191006 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCAC 191053 >seq3761 Length=231418 Score = 122 bits (134), Expect = 1e-22 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 164076 CCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTT 164135 |||| ||||||| || | || ||||| |||||||| ||||||||| |||| ||| | | Sbjct 108171 CCGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCT 108230 Query 164136 CTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGC 164195 || ||||||||| | ||||||||||| || |||||||| || | | || |||||| Sbjct 108231 CTGCAGCTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGT 108290 Query 164196 TCTACAACGGTGGTCCTTTCCAACT 164220 | |||||||||||||||| | |||| Sbjct 108291 TGTACAACGGTGGTCCTTACGAACT 108315 >seq3792 Length=366655 Score = 114 bits (126), Expect = 1e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 164281 TTACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGC 164340 ||||||| | |||||||||||||||||| || ||||| || ||||| || ||||| || Sbjct 281814 TTACCGTTTAGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGCTGC 281873 Query 164341 GAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCT 164400 | ||| || ||| || |||| ||| | |||||||| |||||| || | |||||| | Sbjct 281874 TACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTTT 281933 Query 164401 GGGCATCTCTGGAACCTTCAACTACATG 164428 || |||||||| || ||||| | |||| Sbjct 281934 AGGTATCTCTGGTACTTTCAATTTCATG 281961 >seq1308 Length=500924 Score = 107 bits (118), Expect = 2e-18 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 164806 TCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGA 164865 ||| |||||||| | ||||| ||||| || || ||||||||||| || || ||||| Sbjct 59770 TCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGA 59711 Query 164866 AGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 164919 ||| ||||| || ||||| ||||||||||||||||| ||| | ||||||| ||| Sbjct 59710 AGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 59657 >seq164 Length=700310 Score = 107 bits (118), Expect = 2e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 165984 AATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAGTTT 166043 ||| | ||||| || |||||||| || || || ||| | || || ||||||||||| ||| Sbjct 563857 AATTTACGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAATTT 563916 Query 166044 GAAACGTTCTATACGAAAAACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCTCCT 166103 ||||| || ||||| ||||| || | | |||||||| | | || ||| |||| || Sbjct 563917 GAAACTTTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCAGCT 563976 Query 166104 GTAGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAAC 166160 ||| || |||||||| || |||| ||||| || || || ||||| | || ||| Sbjct 563977 CAAGATCAGCCTCATGAAAATCTTGTATTCCCAGAGGAGGTTCTGCCACGTGGAAAC 564033 >seq2371 Length=186017 Score = 104 bits (114), Expect = 3e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 164007 CAGCGACTACATGTTTCATCATCGCCTTCATCGGTGCTCCTCCTGTGGACATCGATGGCA 164066 |||| ||| || ||||| || || || || | ||||||||||| || || || || | Sbjct 40992 CAGCAACTTCAGTATTCATTATTGCTTTTATTGCAGCTCCTCCTGTAGATATTGACGGTA 41051 Query 164067 TCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTA 164126 |||| ||||| || ||||||| || | || ||||| |||||||| ||||||||| ||| Sbjct 41052 TCCGTGAACCTGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTA 41111 Query 164127 TCCCTTCTTCTAACGCTATCGGTCTGCACT 164156 | ||| | ||| ||||||||| | |||| Sbjct 41112 TTCCTACCTCTGCAGCTATCGGTTTACACT 41141 >seq595 Length=533780 Score = 104 bits (114), Expect = 3e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 165921 ATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCA 165980 ||||| || || || || | ||| | |||| ||| ||||||| | | ||| | || Sbjct 284383 ATGCTATTCGTACCAGTAACTGGATTATGGATGAGTGCTATTGGGGTTGTAGGTTTAGCT 284324 Query 165981 CTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAG 166040 | ||| | ||||| || |||||||| || || || ||| | || || ||||||||||| Sbjct 284323 TTAAATTTACGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAA 284264 Query 166041 TTTGAAACGTTCTATACGAAAAACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCT 166100 |||||||| || ||||| ||||| || | | |||||||| | | || ||| |||| Sbjct 284263 TTTGAAACTTTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCA 284204 Query 166101 CCTGTAGACCAACCTCATGA 166120 || ||| || |||||||| Sbjct 284203 GCTCAAGATCAGCCTCATGA 284184 >seq470 Length=504015 Score = 93.3 bits (102), Expect = 5e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 161555 TACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGTCGTGCAGGC 161614 ||||| | ||||| ||||| ||||| || | | |||||| || ||||| || Sbjct 204296 TACATCTTGGACGCCGCTGAAGAAGCCGGACTCTCTCTGCCCTACTCTTGCCGTGCCGGT 204237 Query 161615 GCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 161674 ||||| || || ||||| ||||| || | ||||| || |||||| ||||||||| Sbjct 204236 GCTTGCTCTTCTTGCGCAGGAAAGGTCACCGCTGGCGAGGTCGACCAAGCTGACCAGTCC 204177 Query 161675 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCCAC 161733 ||| ||||||||||||| || ||| || ||| | ||||| || || | || ||||| Sbjct 204176 TTCTTGGACGATGACCAGATGGATGAGGGATTCGTCCTGACCTGCATTGCGTACCCCAC 204118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557625562296840