Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_031277.1 Length=52561 Score E Sequences producing significant alignments: (Bits) Value seq2905 84.2 7e-12 >seq2905 Length=1000 Score = 84.2 bits (92), Expect = 7e-12 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 32832 CGTGCTCCAGCACCGACTCATGCCCGACCTGCAGGATGTGAGCGAGGTAGTCCTCGTTCT 32891 ||||||| ||||| || |||||||||| ||||||||| || ||| |||||||| Sbjct 579 CGTGCTCGAGCACGGAGAGGTGCCCGACCTCCAGGATGTGGCGGATGTACCCCTCGTTCG 638 Query 32892 CCTCGGTGGCCGGGTTCGGCCGGTGGAAGGACTGGTAGCAGTTCCGGCCGGCGAACTCAG 32951 | | || |||||||||| || | |||||||||||| |||||||||||||| | Sbjct 639 TCGCCGTCTTCGGGTTCGGCTTGTTCCACGACTGGTAGCAGGCGCGGCCGGCGAACTCCG 698 Query 32952 C 32952 | Sbjct 699 C 699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 168065343069262