Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq4073 87.8 2e-12 seq487 84.2 2e-11 >seq4073 Length=488838 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| ||||||||||| || ||||| ||||| |||||||| | || |||| | | Sbjct 173455 ATGCAGATTTTTGTCAAGACCTTGACTGGCAAGACCATTACTTTAGAGGTGGAAAGCTCC 173396 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | | | | | || || ||||| ||||||||||| | || ||||| Sbjct 173395 GACACGATCGACAACGTCAAGGCGAAAATCCAGGACAAAGAAGGAATCCCTCCTGATCAG 173336 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||| | || | || || || || | |||||| |||| |||| || |||||| Sbjct 173335 CAGAGGTTGATCTTCGCCGGTAAGCAGCTCGAAGATGGGCGAACTCTGGCAGACTATAAT 173276 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCT 111317 ||||| ||||| ||||| || ||| | ||| | ||||| Sbjct 173275 ATACAGAAAGAGTCTACCCTGCATCTTGTGCTCCGTCT 173238 >seq487 Length=466406 Score = 84.2 bits (92), Expect = 2e-11 Identities = 165/243 (68%), Gaps = 1/243 (0%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||| || ||||| || |||| || |||||||| || ||||| ||| | Sbjct 183332 AATGCAAATCTTCGTCAAGACTCTGACGGGGAAAACCATCACTCTGGAAGTGGAGAGCTC 183391 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 || | | | | | || ||| ||||| ||||| || || |||| ||| || Sbjct 183392 TGACACCATCGACAATGTGAAAGCCAAAATCCAGGACAAGGAGGGAATTCCTCCCGACCA 183451 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 || | | || | || ||||| || |||||||| | || |||||||||| || Sbjct 183452 GCAGCGATTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACACTGGCCGATTACAA 183511 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCAA-TAAATAAA 111337 || |||||||| || || | ||| | |||||||||||||| || || || ||||| | Sbjct 183512 CATTCAAAAAGAGTCGACGTTGCATCTGGTGTTGCGTCTGCGAGGAGGAAACTAAATCAG 183571 Query 111338 CGT 111340 ||| Sbjct 183572 CGT 183574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421789932411112