Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq2878 235 7e-57 seq467 143 3e-29 seq3282 123 3e-23 seq3761 122 1e-22 seq164 109 7e-19 seq3792 107 2e-18 seq1308 107 2e-18 seq2371 105 8e-18 seq595 87.8 2e-12 >seq2878 Length=397857 Score = 235 bits (260), Expect = 7e-57 Identities = 346/487 (71%), Gaps = 2/487 (0%) Strand=Plus/Plus Query 179007 TGTAATTTCCTTACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTT 179066 |||||||| | ||||| ||||| || ||||| || | | | | ||||| |||| Sbjct 140286 TGTAATTTTTTAACTGCCGCTGTTTCTACTCCAGCAAATAGTTTAGCTCATTCTTTACTA 140345 Query 179067 CTTCTATGGGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTA 179126 | ||||||| || ||||| || || ||||| || ||| |||| | || || || Sbjct 140346 TTATTATGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCAATTAGGTGGTTTA 140405 Query 179127 TGGCCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTT 179186 ||| ||||||| || || || ||||| || || | ||||| || ||| | || || ||| Sbjct 140406 TGGACTTTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTATGTTACGACAATTT 140465 Query 179187 GAAATCGCACG-TCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAAT 179245 ||| | || | ||| || | | |||||||| |||||||| ||||||||||| || || Sbjct 140466 GAACTTGCTAGATCTGTTCAAT-TACGTCCTTATAATGCAATTGCGTTTTCTGGACCTAT 140524 Query 179246 TGCTGTCTTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGC 179305 |||||| ||||| ||||||||||| || |||||| | ||||| || ||||| ||||| Sbjct 140525 TGCTGTTTTTGTATCTGTTTTTCTTATTTATCCTTTAGGACAATCAGGTTGGTTTTTTGC 140584 Query 179306 GCCGTCGTTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAA 179365 || ||||| || || || ||||| | || | || || | || ||||| || || Sbjct 140585 ACCTAGTTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTCAAGGCTTTCATAA 140644 Query 179366 CTGGACGCTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCT 179425 |||||| | ||||| ||||| ||||||||||| || || | | || | || | | Sbjct 140645 CTGGACTTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAGGTGCTGCTCTTTT 140704 Query 179426 TTGTGCCATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAA 179485 || || ||||| |||||||| || ||||| || | |||||||| |||| |||| Sbjct 140705 ATGCGCAATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGATGGTGATGGTGCAAA 140764 Query 179486 TACATTC 179492 |||||| Sbjct 140765 CACATTC 140771 >seq467 Length=265627 Score = 143 bits (158), Expect = 3e-29 Identities = 144/187 (77%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 178404 CACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTC 178463 || |||| | ||| | ||||| ||||| |||||| | || ||||| ||||| ||||| || Sbjct 211283 CAATGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATC 211224 Query 178464 CATCATGGATAGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGG 178523 | | || ||||| || || | ||||| ||||| || || ||||||||||| Sbjct 211223 TGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAA 211164 Query 178524 TCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCACAACTTCCCTCTTGACCTCGCTGC 178583 |||||||||||||| ||||| || ||||| ||||||||||||||||| ||| | ||||| Sbjct 211163 CCTTGGTATGGAAGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGC 211104 Query 178584 TGCTGAA 178590 || |||| Sbjct 211103 TGTTGAA 211097 >seq3282 Length=366234 Score = 123 bits (136), Expect = 3e-23 Identities = 128/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 178393 GGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAAC 178452 ||||| ||||| |||||| | ||| | ||||| ||||| |||||| | || ||||| ||| Sbjct 190886 GGTATTTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAAC 190945 Query 178453 TTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTC 178512 || ||||| || | | || ||||| || || | ||||| ||||| || || || Sbjct 190946 TTTAACCAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATC 191005 Query 178513 AACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCAC 178560 ||||||||| |||||||||||||| ||||| || ||||| |||||| Sbjct 191006 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCAC 191053 >seq3761 Length=231418 Score = 122 bits (134), Expect = 1e-22 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 177746 CCGTCGCTGGTTCCCTGATGTATGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTCTT 177805 |||| ||||||| || | || || || |||||||||||||||||| || ||||| | | Sbjct 108171 CCGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCT 108230 Query 177806 CTAACGCTATTGGTCTCCACTTCTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGGC 177865 || ||||| ||| | |||||||| || || |||||||| |||||| | ||||| ||| Sbjct 108231 CTGCAGCTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGT 108290 Query 177866 TCTACAATGGTGGTCCTTTCCAACT 177890 | ||||| |||||||||| | |||| Sbjct 108291 TGTACAACGGTGGTCCTTACGAACT 108315 >seq164 Length=700310 Score = 109 bits (120), Expect = 7e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 179679 GCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTTC 179738 || || || |||||||| ||||| || | || ||||||||||| || || || || || Sbjct 563866 GCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAATTTGAAACTTTT 563925 Query 179739 TATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGATCAA 179798 ||||| || || || |||| ||||||||| | | |||||||||||| | ||||| Sbjct 563926 TATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCAGCTCAAGATCAG 563985 Query 179799 CCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAAC 179846 || |||||||| ||||||| || || || || ||||| | || ||| Sbjct 563986 CCTCATGAAAATCTTGTATTCCCAGAGGAGGTTCTGCCACGTGGAAAC 564033 >seq3792 Length=366655 Score = 107 bits (118), Expect = 2e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 177951 TTACCGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGC 178010 |||||| ||||||||||||| ||||| ||| ||||| || |||||||| || || || Sbjct 281814 TTACCGTTTAGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGCTGC 281873 Query 178011 ATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCT 178070 ||||||| ||| | | || ||| | |||||||| |||||| |||| |||||| | Sbjct 281874 TACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTTT 281933 Query 178071 GGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCA 178109 |||||| ||| || ||||| | |||| ||| |||| Sbjct 281934 AGGTATCTCTGGTACTTTCAATTTCATGACTGTTCTCCA 281972 >seq1308 Length=500924 Score = 107 bits (118), Expect = 2e-18 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 178492 AACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGT 178551 ||||| ||||| || || ||||||||||| |||||||||||||| ||||| || ||| Sbjct 59754 AACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 59695 Query 178552 AATGCTCACAACTTCCCTCTTGACCTCGCTGCTGCTGAA 178590 || ||||||||||||||||| ||| | ||||||| |||| Sbjct 59694 AACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGAA 59656 >seq2371 Length=186017 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 177691 TTCATCGTCGCTTTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGTGAACCCGTC 177750 ||||| | ||||| | || ||||||||||| || || ||||| ||||||||||| || Sbjct 41006 TTCATTATTGCTTTTATTGCAGCTCCTCCTGTAGATATTGACGGTATCCGTGAACCTGTA 41065 Query 177751 GCTGGTTCCCTGATGTATGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTCTTCTAAC 177810 ||||||| || | || || || |||||||||||||||||| || ||||| | ||| Sbjct 41066 TCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCTCTGCA 41125 Query 177811 GCTATTGGTCTCCACT 177826 ||||| ||| | |||| Sbjct 41126 GCTATCGGTTTACACT 41141 >seq595 Length=533780 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 179679 GCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTTC 179738 || || || |||||||| ||||| || | || ||||||||||| || || || || || Sbjct 284311 GCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAATTTGAAACTTTT 284252 Query 179739 TATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGATCAA 179798 ||||| || || || |||| ||||||||| | | |||||||||||| | ||||| Sbjct 284251 TATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCAGCTCAAGATCAG 284192 Query 179799 CCACATGA 179806 || ||||| Sbjct 284191 CCTCATGA 284184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596276363463920