Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq2878 219 5e-52 seq467 143 3e-29 seq3282 118 1e-21 seq3761 113 5e-20 seq164 113 5e-20 seq1308 111 2e-19 >seq2878 Length=397857 Score = 219 bits (242), Expect = 5e-52 Identities = 359/514 (70%), Gaps = 4/514 (1%) Strand=Plus/Plus Query 170765 TAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCT 170824 |||||| | || || ||||| || || || || || | | | ||||||| | || | Sbjct 140288 TAATTTTTTAACTGCCGCTGTTTCTACTCCAGCAAATAGTTTAGCTCATTCTTTACTATT 140347 Query 170825 ACTTTGGGGTCCTGAGTCTCAGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTG 170884 | | ||||| ||||| | || || ||||| || |||| ||| | || || | || Sbjct 140348 ATTATGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCAATTAGGTGGTTTATG 140407 Query 170885 GAATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGA 170944 || |||||| || || || || || ||||| | ||||| || ||| | || || ||||| Sbjct 140408 GACTTTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTATGTTACGACAATTTGA 140467 Query 170945 AATCAGTCG-TCTCGTAGGGATTA-GACCGTACAATGCAATCGCTTTCTCTGGTCCTATC 171002 | | | | ||| | |||| | || || |||||||| || || ||||| ||||| Sbjct 140468 ACTTGCTAGATCTGTTCA--ATTACGTCCTTATAATGCAATTGCGTTTTCTGGACCTATT 140525 Query 171003 GCTGTGTTTGTCAGCGTGTTCCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCA 171062 ||||| ||||| || || || || |||||| | || || ||| ||||||| || ||| Sbjct 140526 GCTGTTTTTGTATCTGTTTTTCTTATTTATCCTTTAGGACAATCAGGTTGGTTTTTTGCA 140585 Query 171063 CCTTCCTTTGGAGTTGCAGCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAAC 171122 ||| ||||| || || ||||| || | || | || || | ||||| || || ||| Sbjct 140586 CCTAGTTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTCAAGGCTTTCATAAC 140645 Query 171123 TGGACACTGAATCCATTTCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTT 171182 ||||| | || ||||| |||||||||||||| || || | | || | ||| | | Sbjct 140646 TGGACTTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAGGTGCTGCTCTTTTA 140705 Query 171183 TCTGCAATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAAC 171242 | |||||||| |||| ||| || ||||||||||| | ||||||||||||| |||||| Sbjct 140706 TGCGCAATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGATGGTGATGGTGCAAAC 140765 Query 171243 ACCTTTAAGGCATTTGACACGACTCAGGAGGAAG 171276 || || || ||| || | |||||| ||||| Sbjct 140766 ACATTCCGTGCTTTTAACCCAACTCAGTGGGAAG 140799 >seq467 Length=265627 Score = 143 bits (158), Expect = 3e-29 Identities = 141/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 170162 GCTCTTGGTGTCTCCACGATGGCGTTCAACCTGAACGGTTTCAACTTCAACCAGTCCATC 170221 ||| | ||| || ||| ||||| |||||| | || ||||| ||||| ||||| || | Sbjct 211279 GCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTT 211220 Query 170222 ATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTT 170281 | || |||| |||||||| | ||||| ||||| || || ||||||||||| ||| Sbjct 211219 GTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTT 211160 Query 170282 GGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTCGCTGCTGCT 170341 || |||||||| ||||| || ||||| ||||||||||||||||| ||| | ||||||| | Sbjct 211159 GGTATGGAAGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTT 211100 Query 170342 GA 170343 || Sbjct 211099 GA 211098 >seq3282 Length=366234 Score = 118 bits (130), Expect = 1e-21 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 170147 GGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAACCTGAACGGTTTCAAC 170206 || || ||||| || ||| | ||| || ||| ||||| |||||| | || ||||| ||| Sbjct 190886 GGTATTTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAAC 190945 Query 170207 TTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTC 170266 || ||||| || | | || |||| |||||||| | ||||| ||||| || || || Sbjct 190946 TTTAACCAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATC 191005 Query 170267 AACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCAC 170314 ||||||||| ||||| |||||||| ||||| || ||||| |||||| Sbjct 191006 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCAC 191053 >seq3761 Length=231418 Score = 113 bits (124), Expect = 5e-20 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 169500 CCGTTGCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGCTGTTGTGCCCTCTT 169559 |||| |||||||||| | || || || |||||||| ||||||||| || | || | | Sbjct 108171 CCGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCT 108230 Query 169560 CCAACGCAATCGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAAGTCTCGATGAATGGT 169619 | || |||||| | |||||||| || || |||||||| || | | |||||||||| Sbjct 108231 CTGCAGCTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGT 108290 Query 169620 TGTACAACGGTGGTCCTTTCCAACT 169644 |||||||||||||||||| | |||| Sbjct 108291 TGTACAACGGTGGTCCTTACGAACT 108315 >seq164 Length=700310 Score = 113 bits (124), Expect = 5e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 171465 GCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGT 171524 |||||||| |||||||| || || || || ||||| || || || |||| ||||||||| Sbjct 563896 GCAGCAGAGGATCCAGAATTTGAAACTTTTTATACAAAAAATATTTTATTAAATGAAGGT 563955 Query 171525 CTTCGTGCATGGATGGCACCAGTAGACCAACCACATGAAAACTTTGTGTTCCCAGAGGAA 171584 || | || ||||||||| | ||| || || |||||||| |||| ||||||||||| Sbjct 563956 ATTAGAGCTTGGATGGCAGCTCAAGATCAGCCTCATGAAAATCTTGTATTCCCAGAGGAG 564015 Query 171585 GTTCTACCTCGTGGCAA 171601 ||||| || ||||| || Sbjct 564016 GTTCTGCCACGTGGAAA 564032 >seq1308 Length=500924 Score = 111 bits (122), Expect = 2e-19 Identities = 93/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 170230 TCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGA 170289 ||| |||||||| | ||||| ||||| || || ||||||||||| ||||| ||||| Sbjct 59770 TCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGA 59711 Query 170290 AGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTCGCTGCTGCTGA 170343 ||| ||||| || ||||| ||||||||||||||||| ||| | ||||||| ||| Sbjct 59710 AGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 59657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592167775940240