Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq487 145 7e-30 seq2625 134 1e-26 seq4017 116 3e-21 seq4073 111 1e-19 seq824 109 5e-19 seq3627 89.7 5e-13 >seq487 Length=466406 Score = 145 bits (160), Expect = 7e-30 Identities = 165/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||| || ||| |||||| || ||||| ||||| | |||||| || Sbjct 182999 AGACGAAGCACCAAATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCTGCGAGGGTACGA 182940 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || ||||||||||| || ||||| |||| | || || || | |||| || |||| Sbjct 182939 CCATCTTCGAGCTGCTTACCAGCGAAGATCAATCTTTGCTGATCAGGAGGAATGCCCTCC 182880 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| ||| | || |||| |||| | | | ||||||| |||||| |||| || Sbjct 182879 TTGTCC-TGAATCTTAGCTTTAACGTTGTCGATAGTGTCGGAGCTCTCCACTTCCAGAGT 182821 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || |||||||| |||||||| |||||||| Sbjct 182820 GATCGTTTTGCCGGTCAGCGTTTTTACGAAGATCTGCAT 182782 Score = 141 bits (156), Expect = 9e-29 Identities = 160/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||||||| || ||| |||||||| ||||| ||||||| |||||||| |||| || Sbjct 176105 CACCAGATGGAGTGTGGATTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGTCCGTCTTC 176046 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 ||| |||||||||||||| ||||| | ||| ||||| | |||| | |||||||||| | Sbjct 176045 GAGTTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATTCCCTCCTTGTCC-T 175987 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 || |||| | | || | | | || || || ||| ||||| | ||| || || | Sbjct 175986 GAATTTTAACCTTCACATTGTCGATGGTATCACTGCTCTCGACCTCGAGCGTGATGGTCT 175927 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | |||||||| ||||| ||||| ||||||||| Sbjct 175926 TCCCCGTCAGAGTCTTCACGAAGATCTGCATG 175895 Score = 131 bits (144), Expect = 2e-25 Identities = 170/231 (74%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||||||||||| ||| ||| || |||||||| || |||| Sbjct 183559 CCTCCTCGCAGACGCAACACCAGATGCAACGTCGACTCTTTTTGAATGTTGTAATCGGCC 183500 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || ||||||||||| ||||| |||| ||||| ||||| | ||| Sbjct 183499 AGTGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCGGGAGGA 183440 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | |||||||||| || |||| |||| || | | | ||||| ||| ||| Sbjct 183439 ATTCCCTCCTTGTCC-TGGATTTTGGCTTTCACATTGTCGATGGTGTCAGAGCT---CTC 183384 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| |||| || || ||||| |||||||| ||||| ||||| || ||||| Sbjct 183383 CACTTCCAGAGTGATGGTTTTCCCCGTCAGAGTCTTGACGAAGATTTGCAT 183333 Score = 129 bits (142), Expect = 5e-25 Identities = 165/221 (75%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||| || ||| |||||| || ||||| ||||| | |||||||| Sbjct 182543 AGACGAAGCACCAAATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCTGCAAGGGTGCGG 182484 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| ||||||||||| || ||||| |||| | ||| ||||| | ||||| | |||| Sbjct 182483 CCGTCTTCGAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGAATTCCCTCC 182424 Query 41765 TTGTCCATGATTTTTTG-CTTCA-ACGA-CGACACAGTGTCGCTCGACTCCACCTCCACC 41821 |||||| ||| | || | ||||| | | || | |||||| |||||||||| Sbjct 182423 TTGTCC-TGAATCTTGGCCTTCACATTATCG--ATGGTGTCGGAGCTTTCCACCTCCAGA 182367 Query 41822 GTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || |||||||| || ||||| ||||| |||||||| Sbjct 182366 GTAATTGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCAT 182326 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706 ||| | ||||| ||| || ||| |||||| || ||||| ||||| | ||| ||||| | Sbjct 182769 ACGGAGCACCAAATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCTGCGAGAGTGCGGCC 182710 Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTT 41766 || ||||||||||| || ||||| ||||| | ||| ||||| | |||| | ||||| Sbjct 182709 ATCTTCGAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGGTCTGGTGGAATCCCTTCCTT 182650 Query 41767 GTCCATGATTTTTTGCTTCAACGACG-ACACAGTGTCGCTCGACTCCACCTCCACCGTTA 41825 |||| ||||||| |||| ||| | ||| |||||| |||||||| | || | Sbjct 182649 GTCCTGGATTTTTGCCTTC-ACGTTGTCCACGGTGTCGGAGCTTTCCACCTCGAGAGTGA 182591 Query 41826 TCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || ||||| ||||| || ||||| Sbjct 182590 TCGTCTTTCCTGTGAGGGTCTTCACGAAGATTTGCAT 182554 Score = 122 bits (134), Expect = 8e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||| || ||| |||||| || ||||||||||| | ||| || || Sbjct 177253 AGACGAAGCACCAAATGGAGAGTGGACTCCTTTTGGATGTTATAGTCCGCGAGAGTTCGG 177194 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || |||||||||||||||||||| ||||| | ||| ||||| | ||||| | || Sbjct 177193 CCATCTTCGAGCTGCTTGCCGGCGAAGATCAGTCTCTGCTGGTCTGGGGGAATTCCTTCT 177134 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||| | ||| | || || | || | | |||||| |||||||||| || Sbjct 177133 TTGT-CTTGAATCTTAGCCTTGACATTATCGATGGTGTCGGAGCTTTCCACCTCCAGAGT 177075 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || |||||||| || ||||| ||||| |||||||| Sbjct 177074 AATTGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCAT 177036 Score = 120 bits (132), Expect = 3e-22 Identities = 162/227 (71%), Gaps = 18/227 (8%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||| || || ||||||||||||||| ||||| | ||||||||| Sbjct 177709 AGACGAAGCACCAAATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCGAGGGTGCGG 177650 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || |||||||||||||| ||||| ||||| | ||| ||||| | ||||| | ||| Sbjct 177649 CCATCTTCGAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATTCCTTCC 177590 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCC---------ACC 41815 |||||| ||| | || || | |||| | ||| ||| ||| ||| Sbjct 177589 TTGTCC-TGAATCTTGGC--------CTTCACATTATCGATCGTATCCGAGCTTTCTACC 177539 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || ||||| ||||| ||||| || ||||| Sbjct 177538 TCCAGAGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAGATTTGCAT 177492 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| || || ||| ||||||||| ||||| || || | |||||||| |||| || Sbjct 182307 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCTGCAAGGGTGCGGCCGTCTTC 182248 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 ||||||||| || || || |||| | ||| ||||| | ||| | | |||||| ||| | Sbjct 182247 GAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGGATTCCCTCCTTATCC-T 182189 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 || | || || | || | | | || ||||| ||| ||||| | ||| || || | Sbjct 182188 GAATCTTGGCCTTCACATTGTCGATGGTATCGCTGCTCTCGACCTCGAGCGTGATGGTCT 182129 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATC 41868 | |||||||||||||| || || ||||||||||| || Sbjct 182128 TTCCCGTCAGCGTCTTCACAAAGATCTGCATGTTCTC 182092 Score = 102 bits (112), Expect = 8e-17 Identities = 158/227 (70%), Gaps = 18/227 (8%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||| || ||| ||||||||| ||||| ||||| | ||| || || Sbjct 177481 AGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGAGTTCGG 177422 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || ||||||||||| || ||||| ||||| | ||| ||||| | ||||| | ||| Sbjct 177421 CCATCTTCGAGCTGCTTTCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATCCCTTCC 177362 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCC---------ACC 41815 |||||| ||| | || |||| |||| | ||| ||| ||| ||| Sbjct 177361 TTGTCC-TGAATCTTAGCTT--------TCACATTATCGATCGTATCCGAGCTTTCTACC 177311 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || ||||| || || |||| || || ||||| || ||||| Sbjct 177310 TCAAGAGTGATCGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 177264 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| ||| || ||| |||||| || ||||| ||||| | || || || |||| || Sbjct 176789 CACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCTGCAAGAGTTCGGCCGTCCTC 176730 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 ||||||||| ||||| || ||||| | ||| ||||| | |||| | |||||||||| | Sbjct 176729 GAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATTCCCTCCTTGTCC-T 176671 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 || |||| |||| ||| | | || ||| || || || | || || || | Sbjct 176670 GAATTTTGGCTTTGACGTTATCAATGGTATCGGAGCTTTCTACTTCTAAAGTGATAGTCT 176611 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || ||||||||||| Sbjct 176610 TACCGGTGAGTGTTTTCACAAAAATCTGCAT 176580 Score = 98.7 bits (108), Expect = 9e-16 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706 ||| | ||||| ||| || || ||||||||||||||| ||||| | ||| ||||| | Sbjct 183320 ACGGAGCACCAAATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCGAGCGTGCGGCC 183261 Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTT 41766 || |||||||||||||| ||||| ||||| | ||| ||||| | |||| | ||||| Sbjct 183260 ATCTTCGAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGTGGAATTCCTTCCTT 183201 Query 41767 GTCC 41770 |||| Sbjct 183200 GTCC 183197 >seq2625 Length=346021 Score = 134 bits (148), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| |||||| |||||||||||||| || || ||||||| | |||| | || ||| Sbjct 280175 ACCAAATGCAGAGTGCTCTCCTTCTGGATATTGTAGTCGGCCAAACTGCGACCATCCTCG 280116 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 || |||||||||||||| |||| ||||| ||||| | ||| | || |||||||||| | Sbjct 280115 AGTTGCTTGCCGGCGAAAATCAACCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 280056 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 ||||| ||| ||| | | | || ||| ||| ||||||| || ||||| || Sbjct 280055 ATTTTGCTCTT-GACGTTGTCGATGGTATCGGAACTCTCGACCTCCAAAGTGATCGTCTT 279997 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATC 41868 || ||||| ||||| ||||| |||||||| || || Sbjct 279996 CCCTGTCAGAGTCTTCACGAAGATCTGCATCTTCTC 279961 Score = 100 bits (110), Expect = 3e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| |||||| ||| ||||||||||| ||||||| || || || |||| || Sbjct 280631 ACAAGATGAAGCGTGGACTCTTTCTGAATGTTGTAGTCGGCCAGCGTCCGGCCGTCCTCT 280572 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 || || ||||||||||| |||| | ||| || || | ||| | | |||||| ||| | Sbjct 280571 AGTTGTTTGCCGGCGAAGATCAACCTCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGG 280512 Query 41774 ATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 || || ||| || | || | ||||| ||| ||||| | || || |||| Sbjct 280511 ATCTTAGTCTTGACATTGTCG--ATGGTGTCAGAACTCTCGACCTCGAGGGTAATGGTTT 280454 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||||||| || || |||||||| ||||| Sbjct 280453 TCCCCGTCAGAGTTTTAACGAAAATTTGCAT 280423 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||||||||| || ||| |||||| || ||||| ||||| | || || || |||| Sbjct 281318 AACACCAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCCAGCGTTCGGCCGTCC 281259 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || | |||||| ||||| || |||| ||||| || || | |||| | ||||| || Sbjct 281258 TCCAACTGCTTACCGGCAAAAATCAACCGCTGCTGATCTGGTGGAATTCCTTCCTTATCT 281199 Query 41771 ATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 ||| || |||| ||| | | | ||| ||| || ||||||| || || || Sbjct 281198 TGGATCTTAGTCTTC-ACGTTGTCGATAGTATCGGAGCTTTCAACCTCCAGGGTGATAGT 281140 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| |||||||||||||| Sbjct 281139 CTTCCCTGTAAGAGTCTTGACGAAAATCTGCAT 281107 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 || |||| ||| || || |||||| |||||||| ||||||| | ||| || |||| Sbjct 282002 AAGACCAAATGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCCAAGGTACGACCGTCC 281943 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || || ||||| || || || |||| | ||| || || | || | || ||||||||| Sbjct 281942 TCAAGTTGCTTTCCTGCAAAAATCAACCTCTGCTGATCTGGAGGGATGCCTTCCTTGTCC 281883 Query 41771 ATGATTTTTTGCTTCAACGACGACACA-GTGTC---GCTCGACTCCACCTCCACCGTTAT 41826 ||| | || | || ||| | || ||||| |||| |||||||| | || || Sbjct 281882 -TGAATCTTCGTTTTCACGTTGTCAATCGTGTCAGAGCTC---TCCACCTCAAGAGTGAT 281827 Query 41827 CGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| |||| ||||| || ||||||||||| Sbjct 281826 GGTCTTACCGGTCAATGTCTTCACAAAAATCTGCAT 281791 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||||| || ||||| || ||||| || |||| ||| || || | || || Sbjct 281543 ACCAAATGCAAGGTAGATTCCTTTTGGATGTTGTAATCGGCGAGTGTCCGACCATCTTCA 281484 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| || ||||| || |||| | ||| ||||| | |||| | ||||||||| || Sbjct 281483 AGCTGTTTCCCGGCAAAAATCAATCTCTGCTGGTCTGGAGGAATTCCCTCCTTGTCT-TG 281425 Query 41774 ATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | |||| | || || | || | ||||| ||| ||||||| || ||||| || Sbjct 281424 AATTTTGGTTTTCACATTGTCAATGGTGTCGGAACTCTCAACCTCCAAAGTAATCGTCTT 281365 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| || || |||||||||||||| Sbjct 281364 GCCAGTCAAGGTTTTGACGAAAATCTGCAT 281335 >seq4017 Length=874442 Score = 116 bits (128), Expect = 3e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 |||||| || ||||| ||||||| ||||| | | || |||||||||||||||||||| Sbjct 473078 CTCCTTTTGGATGTTGTAGTCGGCCAGGGTCCTTCCATCTTCGAGCTGCTTGCCGGCGAA 473019 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 |||| ||||| || || | |||| | |||||| || |||||| |||| || Sbjct 473018 GATCAATCGCTGCTGATCTGGAGGAATACCCTCCTTATCTTGGATTTTAGTCTTC-ACAT 472960 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | |||||| ||||||||||| ||||| || || || ||||| ||||| | Sbjct 472959 TGTCGATAGTGTCAGAACTCTCCACCTCCAAGGTTATAGTCTTGCCTGTCAGAGTCTTCA 472900 Query 41850 CGAAAATCTGCAT 41862 ||||||||||||| Sbjct 472899 CGAAAATCTGCAT 472887 Score = 116 bits (128), Expect = 3e-21 Identities = 159/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 41648 CGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCG 41707 || ||||| ||||| || || |||||| || ||||||||||||| | || | | Sbjct 473329 CGCAACACAAGATGAAGAGTAGACTCCTTTTGGATGTTATAGTCGGCCAAAGTCCTGCCA 473270 Query 41708 TCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTG 41767 || |||||||| || || ||||| |||| ||||| ||||| | ||||| || |||||| Sbjct 473269 TCTTCGAGCTGTTTCCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTTG 473210 Query 41768 TCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTA 41825 | | ||| |||| | |||| || | | | |||||| ||||||||||| || | Sbjct 473209 T-CTTGAATTTTGGTCTTC-ACATTGTCGATGGTGTCGGAACTCTCCACCTCCAAGGTGA 473152 Query 41826 TCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || || ||||| ||||| |||||||||||||| Sbjct 473151 TGGTCTTGCCTGTCAGAGTCTTCACGAAAATCTGCAT 473115 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| || ||| |||||| || ||||| ||||||| ||||| | | |||| || Sbjct 472867 ACGAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCAAGGGTCCTCCCGTCCTCA 472808 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| ||||| || || ||||| ||||| | || | | ||||||||| | Sbjct 472807 AGCTGCTTGCCTGCGAAGATTAGTCGCTGCTGGTCTGGAGGGATACCCTCCTTGTCTTGG 472748 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 ||||| |||| || | | | |||||| ||||||||||| || || || || Sbjct 472747 ATTTTGGTCTTC-ACATTGTCGATGGTGTCGGAACTCTCCACCTCCAAGGTGATGGTCTT 472689 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| ||||| ||||| |||||||| Sbjct 472688 GCCAGTCAATGTCTTCACGAAGATCTGCAT 472659 Score = 102 bits (112), Expect = 8e-17 Identities = 155/215 (72%), Gaps = 12/215 (6%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| || || ||| |||||| || ||||| || || | || || | | || || Sbjct 472411 ACCAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCCAGCGTCCTTCCATCCTCA 472352 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || ||||| ||||| ||||| | ||||| | |||||| | | || Sbjct 472351 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATACCCTCCTTAT-CTTG 472293 Query 41774 ATTTTTTG-CTT--CAACGACGACACAGTGTC---GCTCGACTCCACCTCCACCGTTATC 41827 | |||| | ||| || | || | ||||| ||| ||||||||| | || || Sbjct 472292 AATTTTAGTCTTTACATTGTCG--ATGGTGTCAGAGCT---CTCCACCTCGAGGGTAATT 472238 Query 41828 GTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||||||||| ||||| ||||| |||||||| Sbjct 472237 GTCTTACCCGTCAAAGTCTTGACGAAGATCTGCAT 472203 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/219 (71%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 41648 CGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCG 41707 |||| ||| ||||||| || ||||| ||||| |||||||| | | ||| || | Sbjct 473557 CGTAGCACAAGATGCAAGGTAGATTCCTTTTGAATATTATAGTCTGCCAAGGTACGACCA 473498 Query 41708 TCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTG 41767 || ||||||||||| ||||| || |||| ||||| ||||| | |||| | |||||| Sbjct 473497 TCCTCGAGCTGCTTACCGGCAAAGATCAATCGCTGCTGGTCGGGAGGAATACCCTCCTTA 473438 Query 41768 TCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGT 41823 ||| ||| ||| |||| ||| | | | || || ||| || ||||||| || Sbjct 473437 TCCTGGATCTTTGTCTTC-ACGTTGTCGATGGTATCTGAGCT---TTCAACCTCCAAAGT 473382 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| || |||| ||||| || || |||||||| Sbjct 473381 GATGGTTTTTCCAGTCAATGTCTTGACAAAGATCTGCAT 473343 >seq4073 Length=488838 Score = 111 bits (122), Expect = 1e-19 Identities = 160/222 (72%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || |||||||| ||| ||| |||||||||||||| || | || || ||| Sbjct 173010 AGACGGAGGACAAGATGCAGGGTGGACTCTTTCTGAATGTTATAATCTGCCAGAGTTCGC 173069 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || ||||||||||| |||||||| |||| | ||| ||||| | |||| | ||| Sbjct 173070 CCATCTTCGAGCTGCTTACCGGCGAAGATCAACCTCTGCTGGTCGGGAGGAATACCTTCC 173129 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCAC 41820 |||||| ||| | || |||| ||| | | | ||||| ||| ||| ||||||| Sbjct 173130 TTGTCC-TGAATCTTCGCTTTGACGTTGTCGATGGTGTCCGAGCT---CTCGACCTCCAG 173185 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || |||| || || ||||| || ||||| Sbjct 173186 AGTGATGGTCTTGCCGGTCAATGTTTTCACGAAGATTTGCAT 173227 Score = 109 bits (120), Expect = 5e-19 Identities = 156/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 || |||| ||| ||||| ||||| || ||||| || || | || ||||| | || Sbjct 173472 AAAACCAAATGAAGCGTCGATTCCTTTTGGATGTTGTAATCCGCCAGAGTGCGACCATCC 173531 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 ||||||||||||||||| || ||||| | ||| ||||| | |||| | |||||||||| Sbjct 173532 TCGAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATCCCCTCCTTGTCC 173591 Query 41771 ATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTAT 41826 ||| |||| | | || | | | ||||| ||| ||| ||||||| ||| || Sbjct 173592 -TGAATTTTGACCTTCACATTGTCGATCGTGTCAGAGCT---CTCGACCTCCAACGTGAT 173647 Query 41827 CGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || |||| ||||| |||||||||||||| Sbjct 173648 GGTCTTTCCAGTCAAGGTCTTGACGAAAATCTGCAT 173683 Score = 105 bits (116), Expect = 6e-18 Identities = 159/222 (72%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || |||||||| ||| ||| |||||||||||||| || | || || ||| Sbjct 172782 AGACGGAGGACAAGATGCAGGGTGGACTCTTTCTGAATGTTATAATCTGCAAGAGTTCGC 172841 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || ||||| ||||| |||||||| |||| | ||| || || | |||| | ||| Sbjct 172842 CCATCTTCGAGTTGCTTACCGGCGAAGATCAACCTCTGCTGATCGGGAGGAATACCTTCC 172901 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCAC 41820 |||||| ||| | || |||| ||| | | | ||||| ||| ||| ||||||| Sbjct 172902 TTGTCC-TGAATCTTCGCTTTGACGTTGTCGATGGTGTCCGAGCT---CTCGACCTCCAG 172957 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || ||||| || || ||||| || ||||| Sbjct 172958 AGTGATGGTCTTGCCGGTCAGTGTTTTCACGAAGATTTGCAT 172999 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||| |||||||| || ||| ||||| || |||||||| | || || ||| Sbjct 173238 AGACGGAGCACAAGATGCAGGGTAGACTCTTTCTGTATATTATAGTCTGCCAGAGTTCGC 173297 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || ||||||||||| |||||||| |||| | ||| || || | || | | || Sbjct 173298 CCATCTTCGAGCTGCTTACCGGCGAAGATCAACCTCTGCTGATCAGGAGGGATTCCTTCT 173357 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| || |||| || | ||| | | | |||||| |||||||| | || Sbjct 173358 TTGTCC-TGGATTTTCGCCTTGACGTTGTCGATCGTGTCGGAGCTTTCCACCTCTAAAGT 173416 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || |||| ||||| || ||||||||||| Sbjct 173417 AATGGTCTTGCCAGTCAAGGTCTTGACAAAAATCTGCAT 173455 >seq824 Length=416372 Score = 109 bits (120), Expect = 5e-19 Identities = 138/187 (74%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 |||||| ||||| || ||||||||| ||||| ||||||| |||||||| | || || Sbjct 212153 CACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACCATCTTC 212094 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 ||||||||||| ||||| |||| ||||| ||||| | ||||| | |||||||||| Sbjct 212093 AAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTG 212034 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 ||| || |||| || | | | ||||| ||||||||||| | || || || | Sbjct 212033 GATCTTGGTCTTC-ACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATAGTCT 211975 Query 41832 TACCCGT 41838 | ||||| Sbjct 211974 TGCCCGT 211968 >seq3627 Length=715207 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||| || |||| || |||||| |||||||| ||||||| || ||||| | || || Sbjct 381942 CACAAGGTGCAAGGTAGACTCCTTTTGAATGTTGTAGTCGGCAAGAGTGCGACCATCTTC 381883 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 ||||||||||| ||||| |||| ||||| || |||| |||| | |||||||||| Sbjct 381882 CAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGATCCGGAGGAATCCCCTCCTTGTCCTG 381823 Query 41773 GATTTTTTGCTTCA 41786 ||| || ||||| Sbjct 381822 GATCTTGGTCTTCA 381809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462280093104400