Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1948 95.1 1e-14 >seq1948 Length=2296919 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/236 (70%), Gaps = 7/236 (3%) Strand=Plus/Plus Query 16309 CCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGC 16368 |||||||||||| || || || ||| | || || || | | || |||||| | | | Sbjct 1731754 CCCCGAAAAGAAAATCCCTTCGACACAGGCGAAGGCCAGAATTCTCTCCGCGAAGCTTCC 1731813 Query 16369 ATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGT 16428 | | | | | ||||||||| | ||||||| ||||| | | | ||| || || Sbjct 1731814 AGCACTGT---GGATCCATTTCAGAGCCCATTCTGCTTTCTTGGTGACACATGGTATGGT 1731870 Query 16429 TTCTATGGCCTTAAACAATTTCTCTTTTTC-CTGAAT-ATCGATTATATACGTATCAATC 16486 ||| ||||| || || | | |||||| | | || ||| | || || | || | | Sbjct 1731871 TTCAATGGCGTTGAAGAGC--CGATTTTTCTCGGCATGATCTTTGATGTATGCCTCCAAC 1731928 Query 16487 AGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAA 16542 |||||||||||||| || ||||||||||| || ||||| ||||||||||| ||||| Sbjct 1731929 AGTAAACTGTACATCTCAGAGTGTATGTTTTCGATGGCAATCTGAAATCCGTAGAA 1731984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511401678566800