Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1917 152 8e-32 seq1943 127 3e-24 seq1762 122 1e-22 seq1721 118 2e-21 seq1814 104 4e-17 seq1862 89.7 8e-13 >seq1917 Length=1730829 Score = 152 bits (168), Expect = 8e-32 Identities = 176/232 (76%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | ||||| | || || || ||||| || | ||| | || ||| Sbjct 507902 ATGCAAATCTTTGTGAAGACGTTGACGGGGAAGACTATCACCTTGGAGGTGGAGAGCTC- 507960 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||| || ||| || |||| || ||| |||||||| || ||||| || || || |||| Sbjct 507961 TGACACGATTGACAACGTTAAGAC-GAAGATTCAAGACAAGGAAGGCATTCCTCCCGATC 508019 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | |||||||||||||| || || |||||||| |||||| |||| || || | ||| || | Sbjct 508020 AGCAAAGGCTTATTTTCGCCGGCAAACAATTGGAGGATGGTCGCACCTTGGCAGACTACA 508079 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || |||||||||||||| |||||||| || |||| || |||||||| || Sbjct 508080 ACATCCAAAAAGAATCAACCTTGCATTTAGTCCTACGATTGCGAGGTGGCAT 508131 >seq1943 Length=2190071 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||||||||| | ||||| || || || || ||||| || | ||| | || | Sbjct 1470300 ATGCAAATATTCGTGAAGACGCTTACGGGAAAGACTATTACATTGGAGGTGGAGAGTTCT 1470359 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | || || |||||||| || |||||||| ||||||||||| Sbjct 1470360 GATACCATAGATAACGTCAAGACCAAGATTCAAGACAAGGAAGGTATTCCACCTGATCAG 1470419 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| |||| || ||||| ||||| || ||||||||| |||| || | | ||| || || Sbjct 1470420 CAACGGCTAATCTTTGCCGGAAAGCAGTTAGAGGATGGTCGTACTCTTGCAGACTACAAC 1470479 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || || || ||| | || | |||||| |||| ||||| Sbjct 1470480 ATTCAGAAGGAGTCCACATTACATCTTGTCCTCCGTTTAAGAGGAGGTAT 1470529 Score = 107 bits (118), Expect = 3e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| | || ||||| || || ||| ||||| |||| ||| Sbjct 1470528 ATGCAGATTTTTGTGAAGACTTTGACTGGCAAGACAATTACTCTAGAGGTTGAGAGCTC- 1470586 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| || || | || ||||| || |||||||||||||| || ||||| || Sbjct 1470587 TGATACCATAGACAACGTGAAGACCAAAATCCAGGATAAAGAAGGTATCCCTCCTGACCA 1470646 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || ||||| || || || || |||||||| |||| || | | ||||| || Sbjct 1470647 GCAGCGTCTGATTTTCGCTGGGAAGCAGTTAGAGGACGGTCGTACTCTGGCCGATTACAA 1470706 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||| || || || ||||| | ||| | ||| || | || || || Sbjct 1470707 TATTCAAAAGGAGTCTACCTTGCACCTTGTTCTTCGTCTAAGGGGAGGGAT 1470757 Score = 102 bits (112), Expect = 1e-16 Identities = 156/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||||||||| | || || || || || || || || || | || |||| ||| | Sbjct 1469844 ATGCAAATATTCGTCAAAACGCTGACGGGGAAGACGATTACGTTGGAAGTTGAGAGCTCA 1469903 Query 124598 TGATACAATTTCTAA-TTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||| ||| ||| |||| || ||| |||||||| ||||||||||| |||||||| | Sbjct 1469904 -GATACTATTGATAACGTTAAGAC-GAAGATTCAAGACAAAGAAGGTATTCCACCTGACC 1469961 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | ||| | | |||||||| ||||| || || |||||| | || || | | ||||| | Sbjct 1469962 AGCAACGATTGATTTTTGCCGGAAAGCAGTTGGAGGATGGGCGTACTCTGGCCGATTACA 1470021 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACG 124753 | ||||| || || || || | || |||| || || Sbjct 1470022 ACATTCAGAAGGAGTCCACGCTTCACCTGGTGTTGCG 1470058 Score = 91.5 bits (100), Expect = 2e-13 Identities = 165/240 (69%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | ||||| | || || || ||||| || |||| | ||| | Sbjct 1470072 ATGCAAATATTTGTTAAGACGTTGACGGGGAAGACTATCACATTAGAAGTGGAAAGTTCT 1470131 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || || | || || ||||| || |||||||| || || || ||||| Sbjct 1470132 GACACCATCGACAACGTGAAGACTAAGATTCAGGACAAAGAAGGAATTCCCCCGGATCAG 1470191 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || ||||| ||||| || || ||| | || ||| |||| || || | ||||| || Sbjct 1470192 CAGAGACTTATCTTTGCCGGCAAGCAACTGGAAGATGGTCGTACTTTGGCTGATTACAAC 1470251 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777 ||||| || || || || |||| ||||| | || || |||| || || ||| |||| Sbjct 1470252 ATTCAGAAGGAGTCCACCCTGCACTTGGTCCTGCGCTTGAGAGGAGGGATGCAAATATTC 1470311 >seq1762 Length=742324 Score = 122 bits (134), Expect = 1e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | |||||| | || || || || ||||| | ||| | ||| Sbjct 518971 ATGCAAATTTTTGTCAAGACATTGACGGGGAAGACGATAACATTGGAGGTGGAAAGTTCC 519030 Query 124599 GATACAATTTCTAATTTAAA-ACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| |||| |||| ||| || || || || || || || || || || || || Sbjct 519031 GATACTATTGATAATGTAAAGACA-AAGATACAGGACAAGGAGGGCATCCCTCCCGACCA 519089 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||||||||||||||| || ||| | || || |||| || || | |||||||| Sbjct 519090 GCAGAGGCTTATTTTTGCAGGTAAGCAACTGGAAGACGGTCGTACTTTGGCTGATTATAA 519149 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| ||||| ||||| || |||||| | || || || || | || ||||| Sbjct 519150 TATCCAAAAGGAATCGACCTTGCATCTTGTGTTGCGGTTGAGGGGAGGTAT 519200 >seq1721 Length=608652 Score = 118 bits (130), Expect = 2e-21 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || ||||| || ||| | ||||| || || ||||| || || ||| | ||| ||||| || Sbjct 212741 ACCATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATTACTCTCGAGGTTGAATCA 212800 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 ||||| || |||| | || |||||| || || || || || || || || || Sbjct 212801 TCAGATACTATCGATAATGTGAAGACGAAAATCCAGGACAAGGAGGGCATTCCTCCCGAC 212860 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || || ||||| ||||| || ||||| || | |||||| | || || | | || || Sbjct 212861 CAGCAGAGGCTCATTTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTTGCTGACTAC 212920 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 ||||| || || || || |||||||||||||| | || | ||||| ||||||| Sbjct 212921 AATATCCAGAAGGAGTCCACTTTGCATTTGGTGCTCCGCCTTCGAGGAGGTATTA 212975 >seq1814 Length=924488 Score = 104 bits (114), Expect = 4e-17 Identities = 166/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 |||||| || ||| | ||||| | ||||| || || || ||| | ||| | || ||| Sbjct 463091 AATGCAGATTTTTGTGAAGACCTTGACAGGGAAGACGATTACTCTCGAGGTAGAGAGCTC 463150 Query 124597 ATGATACAATTTCTAATTTAAA-ACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 || |||||| |||| | || ||| || || || ||||| || || || || || || Sbjct 463151 G-GACACAATTGATAATGTGAAGACA-AAGATCCAGGATAAGGAGGGCATCCCGCCCGAC 463208 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || || ||| | |||||||||||||| ||||| || || | || || | | || || Sbjct 463209 CAGCAGAGGTTGATTTTTGCAGGAAAGCAATTGGAAGACGGGCGCACCCTTGCTGACTAC 463268 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || ||||| |||||| ||||| | || || |||||||||| Sbjct 463269 AACATCCAGAAGGAGTCAACCTTGCATCTGGTTCTGCGCTTGAGAGGTGGTAT 463321 >seq1862 Length=1177009 Score = 89.7 bits (98), Expect = 8e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || ||||| ||||| || ||||||||||| || | | || || || || || || ||| Sbjct 566769 CAGGATAAGGAAGGCATTCCACCTGATCAGCAGCGCTTAATCTTCGCCGGTAAGCAGTTA 566710 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 |||||| || ||||| | ||||| || || || || ||||||||| ||||| |||| Sbjct 566709 GAGGATGAGCGTACATTGGCCGATTACAACATCCAGAAGGAATCAACTCTGCATCTGGTG 566650 Query 124749 TTACGTTTACGAGGTGGTATTA 124770 | || ||||| || |||| || Sbjct 566649 CTTCGGTTACGGGGCGGTACTA 566628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755437208032000