Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1917 104 2e-17 seq1943 86.0 5e-12 >seq1917 Length=1730829 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 |||||||||||||| ||||||||||| |||| || || ||| |||||||||||||| Sbjct 508098 GTTGATTCTTTTTGGATGTTGTAGTCTGCCAAGGTGCGACCATCCTCCAATTGTTTGCCG 508039 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 || | ||||| ||||| ||||| || | ||||||||| || ||| | ||| Sbjct 508038 GCGAAAATAAGCCTTTGCTGATCGGGAGGAATGCCTTCCTTGTCTTGAATCTTCGTCTTA 507979 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | ||| |||||| | ||| || | |||||| | || || ||||| || Sbjct 507978 ACGTTGTCAATCGTGTCAGAGCTCTCCACCTCCAAGGTGATAGTCTTCCCCGTCAACGTC 507919 Query 18309 TTTACAAAAATTTGCAT 18325 || ||||| |||||||| Sbjct 507918 TTCACAAAGATTTGCAT 507902 >seq1943 Length=2190071 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || || || ||||||||||| || |||| || || |||| Sbjct 1470283 AGGACCAAGTGCAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAAAGTACGACCATCT 1470224 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||| ||||| ||| |||||||||| || |||||| ||| | ||||| || || Sbjct 1470223 TCCAGTTGCTTGCCGGCAAAGATAAGTCTCTGCTGATCCGGGGGAATTCCTTCTTTGTCC 1470164 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||| | ||| || | | | |||||| || ||| | ||||| | Sbjct 1470163 TGAATCTTAGTCTTCACGTTGTCGATGGTGTCAGAACTTTCCACTTCTAATGTGATAGTC 1470104 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || ||||| || || ||||| |||||||| Sbjct 1470103 TTCCCCGTCAACGTCTTAACAAATATTTGCAT 1470072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379334799722550