Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1886 170 2e-37 seq1948 107 2e-18 seq1774 91.5 2e-13 >seq1886 Length=1372085 Score = 170 bits (188), Expect = 2e-37 Identities = 259/362 (72%), Gaps = 10/362 (3%) Strand=Plus/Minus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| || ||||| |||||||||||||| ||||| |||| || | |||||| |||| Sbjct 694654 ACAGCAGGCATGCAAAATCGCAGTGCAGGCCCTCATCTCGTGAGATGAGTTCGTTGGAAA 694595 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG- 33692 |||| || || ||||| || || | ||| || |||||||| |||| || || ||| Sbjct 694594 ACGTAAGCCCTGGCATAAGACCTCTCTTCTTGAGCCAAAAGATGGC-GCAAAAACTCCCT 694536 Query 33693 GAAAAGAAGATTCCTTCTACTGCAG-CAAAGGCAATAAGTCTCTCTCCATAAC---CGGC 33748 |||||||| || || || || |||| | || || | | ||||||| || | | | || Sbjct 694535 GAAAAGAAAATCCCCTCGAC-GCAGGCGAAAGCCAGGATTCTCTCTGCAAAGCTCCCAGC 694477 Query 33749 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33808 ||||| ||||| ||| ||||||| || |||||| | || ||||| || || || Sbjct 694476 ACTGTCG---ATCCATTTTAGAGCCCAGTCAGCCTTCCTAGCAACGCAAGGTATGGTCTC 694420 Query 33809 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 33868 |||||||| || || | | || ||| |||||||| || | || | ||| | Sbjct 694419 AATGGCATTGAAAAGTCTGCTCTTCTCAGCTTGATCTTTAATGTACGCCTCCAACAACAA 694360 Query 33869 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33928 ||| |||||||| || |||||||| ||||| || ||||| ||||||||||| ||| || Sbjct 694359 ACTGTACATTTCTGAGTGAATGTTCTCAATAGCTATCTGGAATCCGTAGAACGCTCTGGC 694300 Query 33929 CT 33930 || Sbjct 694299 CT 694298 >seq1948 Length=2296919 Score = 107 bits (118), Expect = 2e-18 Identities = 171/244 (70%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 33690 CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CG 33746 || |||||||| || ||||| || || ||||| | || |||||| | | | | Sbjct 1731755 CCCGAAAAGAAAATCCCTTCGACACAGGCGAAGGCCAGAATTCTCTCCGCGAAGCTTCCA 1731814 Query 33747 GCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 33806 || |||| | ||||| || ||||||| || || ||||| | ||||| || || ||| Sbjct 1731815 GCACTGT---GGATCCATTTCAGAGCCCATTCTGCTTTCTTGGTGACACATGGTATGGTT 1731871 Query 33807 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 33866 || ||||| || ||||| ||||| || | |||||| | || | || | || Sbjct 1731872 TCAATGGCGTTGAAGAGCCGATTTTTCTCGGCATGATCTTTGATGTATGCCTCCAACAGT 1731931 Query 33867 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 33926 | ||| ||||| || || || |||||||| ||||| ||||||||||||||||| ||| Sbjct 1731932 AAACTGTACATCTCAGAGTGTATGTTTTCGATGGCAATCTGAAATCCGTAGAATGCTCTT 1731991 Query 33927 GCCT 33930 |||| Sbjct 1731992 GCCT 1731995 >seq1774 Length=893538 Score = 91.5 bits (100), Expect = 2e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 |||||||||||||||||| |||||||| |||| ||| | ||||| || || || || Sbjct 738439 ACATGCGAAATCGCAGTGTAGACCCTCATCTCGTGAAATAAGCTCGTTGGAGAAAGTAAG 738498 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAA 33680 || ||||| ||||| | |||||| ||||| ||||||||| Sbjct 738499 CCCTGGCATGAGGCCCCTCTTTTTCAGCCAGAATATGGAA 738538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629801933287200