Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1925 84.2 2e-11 >seq1925 Length=1847415 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 38410 GGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAA 38469 ||||| || ||||| |||| || ||||| || || |||||||| ||| |||| Sbjct 481842 GGAGTCCCTGCGTTGAATAGGGTTGGAGACGCGTGGGTGAACCATCTTTGGGACATCATG 481901 Query 38470 TTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATT 38529 | |||||| | || || | || || | | ||| ||||| | ||||||||||| Sbjct 481902 TGATATGTCTTTAGGACCGCCTCGATGTTCTCCTTGTGGATACCAACGGATACCCTCATA 481961 Query 38530 AGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCT 38589 ||||| ||||| || ||||| | | |||| || ||| || ||||| ||| | ||| Sbjct 481962 AGCATGTGTTGAGGCCTTTCCACGACTTTACCGTTAACTTTCAGAAGATAAGATCTCTCT 482021 Query 38590 AATGTTTTTATTCCAAAATAA 38610 ||||| || | ||||| ||| Sbjct 482022 AATGTCTTGAAGCCAAAGTAA 482042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468513145445600