Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1886 181 1e-40 seq1948 107 3e-18 seq1774 98.7 1e-15 seq1925 89.7 7e-13 >seq1886 Length=1372085 Score = 181 bits (200), Expect = 1e-40 Identities = 259/361 (72%), Gaps = 8/361 (2%) Strand=Plus/Minus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||| || ||||| ||||||||||| || ||||| |||| || | ||||||||||| Sbjct 694654 ACAGCAGGCATGCAAAATCGCAGTGCAGGCCCTCATCTCGTGAGATGAGTTCGTTGGAAA 694595 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA- 36268 |||| || || ||||| || || | ||| || |||||||| |||| |||||| ||| Sbjct 694594 ACGTAAGCCCTGGCATAAGACCTCTCTTCTTGAGCCAAAAGATGG-CGCAAAAACTCCCT 694536 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCA 36325 ||||||||||| || || || || || || | | ||||||| || | | | ||| Sbjct 694535 GAAAAGAAAATCCCCTCGACGCAGGCGAAAGCCAGGATTCTCTCTGCAAAGCTCCCAGCA 694476 Query 36326 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385 ||||| ||||| ||| ||||||| || |||||| | || ||||| || ||||| Sbjct 694475 CTGTCG---ATCCATTTTAGAGCCCAGTCAGCCTTCCTAGCAACGCAAGGTATGGTCTCA 694419 Query 36386 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 36445 || ||||| || || | | || ||| |||||||| || | || | ||| | | Sbjct 694418 ATGGCATTGAAAAGTCTGCTCTTCTCAGCTTGATCTTTAATGTACGCCTCCAACAACAAA 694359 Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 36505 || |||||||| || |||||||| ||||| || || || ||||||||||| ||| ||| Sbjct 694358 CTGTACATTTCTGAGTGAATGTTCTCAATAGCTATCTGGAATCCGTAGAACGCTCTGGCC 694299 Query 36506 T 36506 | Sbjct 694298 T 694298 >seq1948 Length=2296919 Score = 107 bits (118), Expect = 3e-18 Identities = 171/244 (70%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 36266 CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CG 36322 || ||||||||||| ||||| || || ||||| | || |||||| | | | | Sbjct 1731755 CCCGAAAAGAAAATCCCTTCGACACAGGCGAAGGCCAGAATTCTCTCCGCGAAGCTTCCA 1731814 Query 36323 GCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 36382 ||||||| | ||||| || ||||||| || || ||||| | ||||| || || || Sbjct 1731815 GCACTGT---GGATCCATTTCAGAGCCCATTCTGCTTTCTTGGTGACACATGGTATGGTT 1731871 Query 36383 TCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA 36442 || || || || ||||| ||||| || | |||||| | |||| || | || Sbjct 1731872 TCAATGGCGTTGAAGAGCCGATTTTTCTCGGCATGATCTTTGATGTATGCCTCCAACAGT 1731931 Query 36443 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTA 36502 | ||| ||||| || || || |||||||| ||||| || |||||||||||||| ||| Sbjct 1731932 AAACTGTACATCTCAGAGTGTATGTTTTCGATGGCAATCTGAAATCCGTAGAATGCTCTT 1731991 Query 36503 GCCT 36506 |||| Sbjct 1731992 GCCT 1731995 >seq1774 Length=893538 Score = 98.7 bits (108), Expect = 1e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216 ||||||||||||||||||||||||||| |||| ||| | |||||||| || || || Sbjct 738439 ACATGCGAAATCGCAGTGTAGACCCTCATCTCGTGAAATAAGCTCGTTGGAGAAAGTAAG 738498 Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGA 36255 || ||||| ||||| | |||||| ||||| |||||||| Sbjct 738499 CCCTGGCATGAGGCCCCTCTTTTTCAGCCAGAATATGGA 738537 >seq1925 Length=1847415 Score = 89.7 bits (98), Expect = 7e-13 Identities = 248/378 (66%), Gaps = 2/378 (1%) Strand=Plus/Plus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATG 66118 || |||| ||| || || || || |||||||| | ||| || ||||| | | |||| Sbjct 481351 ACACGTTGCATGAAAAGGTCGGGGATCCAAAGTCC-ATAGAACAAATCCCGAGCTCTACT 481409 Query 66119 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 |||||| || || |||||| ||| || | | | | ||||| |||||| || Sbjct 481410 TTCCTCCTTCCCGTGGTTCTTTCGAAGGTCCAACCATTCGAAGATATCTGCATGCCAGGG 481469 Query 66179 TTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 66238 ||| | ||| || || | | || || || || ||||| || | || | || Sbjct 481470 TTCAAGGTAAATTGCAAACGCACCCTTCCTCTTACCGCCACCCTGGTCAACATACCGGGC 481529 Query 66239 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGA 66298 |||| |||| | || |||| ||| || || ||||||||||| || |||||||| || Sbjct 481530 AGTGTCATTAAACACCCTCAGCATGGGGATTATACCATTGGAAGTTCCATTGGTGCCCCG 481589 Query 66299 GATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTT 66358 ||| ||||| || | | || || ||| | || || || || || || ||| || Sbjct 481590 GATGTAGCTGCCTGTCGTGCGGATGTTATGGACAGACAGGCCAATGCCACCGGCCGACTT 481649 Query 66359 AGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT 66418 |||| || || || | ||||| || || ||||| ||||| |||| |||| Sbjct 481650 GCTAATTACAGCACACTCCTTCAGGGTATCGTAAATCCCCTCAATACTGTCATTTTTCAT 481709 Query 66419 GTTAAGTAGAAAACAGCT 66436 | ||||| |||||||| Sbjct 481710 GCACAGTAGGAAACAGCT 481727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658156427951600