Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1886 190 3e-43 seq1948 114 2e-20 seq1774 98.7 1e-15 >seq1886 Length=1372085 Score = 190 bits (210), Expect = 3e-43 Identities = 261/361 (72%), Gaps = 8/361 (2%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| || ||||| |||||||||||||| ||||| |||| || ||||||||||||| Sbjct 694654 ACAGCAGGCATGCAAAATCGCAGTGCAGGCCCTCATCTCGTGAGATGAGTTCGTTGGAAA 694595 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC-AAATGACCCA 50070 |||| || || ||||| || || | ||| || |||||||| |||| ||| ||| ||| Sbjct 694594 ACGTAAGCCCTGGCATAAGACCTCTCTTCTTGAGCCAAAAGATGG-CGCAAAAACTCCCT 694536 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACT---GGCG 50127 |||||||| || || || || ||| || || | | ||||||| || | || || Sbjct 694535 GAAAAGAAAATCCCCTCGACGCAGGCGAAAGCCAGGATTCTCTCTGCAAAGCTCCCAGCA 694476 Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 ||||| ||||| ||| ||||||| || |||||| | || ||||| || || || Sbjct 694475 CTGTC---GATCCATTTTAGAGCCCAGTCAGCCTTCCTAGCAACGCAAGGTATGGTCTCA 694419 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 |||||||| || || | | || ||| |||||||| || | || | ||| | | Sbjct 694418 ATGGCATTGAAAAGTCTGCTCTTCTCAGCTTGATCTTTAATGTACGCCTCCAACAACAAA 694359 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 || |||||||| || |||||||| ||||| || ||||| ||||||||||| ||| ||| Sbjct 694358 CTGTACATTTCTGAGTGAATGTTCTCAATAGCTATCTGGAATCCGTAGAACGCTCTGGCC 694299 Query 50308 T 50308 | Sbjct 694298 T 694298 >seq1948 Length=2296919 Score = 114 bits (126), Expect = 2e-20 Identities = 173/245 (71%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 50067 CCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG-- 50124 ||| |||||||| || ||||| || ||| ||||| | || |||||| | | || Sbjct 1731754 CCCCGAAAAGAAAATCCCTTCGACACAGGCGAAGGCCAGAATTCTCTCCGCGAAGCTTCC 1731813 Query 50125 -GCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT 50183 || |||| | ||||| || ||||||| || || ||||| | ||||| || || || Sbjct 1731814 AGCACTGT---GGATCCATTTCAGAGCCCATTCTGCTTTCTTGGTGACACATGGTATGGT 1731870 Query 50184 TTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAA 50243 ||| ||||| || ||||| ||||| || | |||||| | || | || | || Sbjct 1731871 TTCAATGGCGTTGAAGAGCCGATTTTTCTCGGCATGATCTTTGATGTATGCCTCCAACAG 1731930 Query 50244 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCT 50303 | ||| ||||| || || || |||||||| ||||| ||||||||||||||||| ||| Sbjct 1731931 TAAACTGTACATCTCAGAGTGTATGTTTTCGATGGCAATCTGAAATCCGTAGAATGCTCT 1731990 Query 50304 AGCCT 50308 |||| Sbjct 1731991 TGCCT 1731995 >seq1774 Length=893538 Score = 98.7 bits (108), Expect = 1e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 |||||||||||||||||| |||||||| |||| ||| || |||||||| || || || Sbjct 738439 ACATGCGAAATCGCAGTGTAGACCCTCATCTCGTGAAATAAGCTCGTTGGAGAAAGTAAG 738498 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGA 50057 || ||||| ||||| | |||||| ||||| |||||||| Sbjct 738499 CCCTGGCATGAGGCCCCTCTTTTTCAGCCAGAATATGGA 738537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718250933063600