Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1943 84.2 2e-11 >seq1943 Length=2190071 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 ||||||| || | ||| |||||| || | |||||||||| || ||||| | || Sbjct 1470055 AACACCAGGTGAAGCGTGGACTCCTTCTGAATGTTGTAATCGGCCAGAGTACGCCCATCC 1469996 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 ||||| || || ||||||||||||||||| || || || | || | ||||||||| || Sbjct 1469995 TCCAACTGCTTTCCGGCAAAAATCAATCGTTGCTGGTCAGGTGGAATACCTTCTTTGTCT 1469936 Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGT 43076 ||| | || || | ||| || || ||| ||| || || | ||| || || Sbjct 1469935 TGAATCTTCGTCTTAACGTTATCAATAGTATC-TGAGCTCTCAACTTCCAACGTAATCGT 1469877 Query 43077 TTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || || || ||||| || || |||||||| Sbjct 1469876 CTTCCCCGTCAGCGTTTTGACGAATATTTGCAT 1469844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381360350595420