Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1886 194 2e-44 seq1948 116 5e-21 seq1774 93.3 6e-14 >seq1886 Length=1372085 Score = 194 bits (214), Expect = 2e-44 Identities = 262/361 (73%), Gaps = 8/361 (2%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| || ||||| |||||||||||||| |||||||||| || | ||||||||||| Sbjct 694654 ACAGCAGGCATGCAAAATCGCAGTGCAGGCCCTCATCTCGTGAGATGAGTTCGTTGGAAA 694595 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA- 42175 |||| || || ||||| || || | ||| || |||||||| || | |||||| ||| Sbjct 694594 ACGTAAGCCCTGGCATAAGACCTCTCTTCTTGAGCCAAAAGATGG-CGCAAAAACTCCCT 694536 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCA 42232 |||||||| || || || || || || || | | ||||||| || | | | ||| Sbjct 694535 GAAAAGAAAATCCCCTCGACGCAGGCGAAAGCCAGGATTCTCTCTGCAAAGCTCCCAGCA 694476 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 ||||| ||||| ||| ||||||| || |||||| | || ||||| || || || Sbjct 694475 CTGTCG---ATCCATTTTAGAGCCCAGTCAGCCTTCCTAGCAACGCAAGGTATGGTCTCA 694419 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 |||||||| || || | | || ||| |||||||| || | || | ||| | | Sbjct 694418 ATGGCATTGAAAAGTCTGCTCTTCTCAGCTTGATCTTTAATGTACGCCTCCAACAACAAA 694359 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 || ||||||||||| |||||||| ||||| || ||||| ||||||||||| ||||||| Sbjct 694358 CTGTACATTTCTGAGTGAATGTTCTCAATAGCTATCTGGAATCCGTAGAACGCTCTGGCC 694299 Query 42413 T 42413 | Sbjct 694298 T 694298 >seq1948 Length=2296919 Score = 116 bits (128), Expect = 5e-21 Identities = 173/244 (71%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 42173 CCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CG 42229 || |||||||| || ||||| || || ||||| | || |||||| | | | | Sbjct 1731755 CCCGAAAAGAAAATCCCTTCGACACAGGCGAAGGCCAGAATTCTCTCCGCGAAGCTTCCA 1731814 Query 42230 GCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 42289 ||||||| | ||||| || ||||||| || || ||||| | ||||| || || ||| Sbjct 1731815 GCACTGT---GGATCCATTTCAGAGCCCATTCTGCTTTCTTGGTGACACATGGTATGGTT 1731871 Query 42290 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAA 42349 || ||||| || ||||| ||||| || | |||||| | |||| || | || Sbjct 1731872 TCAATGGCGTTGAAGAGCCGATTTTTCTCGGCATGATCTTTGATGTATGCCTCCAACAGT 1731931 Query 42350 AGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTG 42409 | ||| ||||| || || || |||||||| ||||| ||||||||||||||||| ||| Sbjct 1731932 AAACTGTACATCTCAGAGTGTATGTTTTCGATGGCAATCTGAAATCCGTAGAATGCTCTT 1731991 Query 42410 GCCT 42413 |||| Sbjct 1731992 GCCT 1731995 >seq1774 Length=893538 Score = 93.3 bits (102), Expect = 6e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 |||||||||||||||||| ||||||||||||| ||| | |||||||| || || || Sbjct 738439 ACATGCGAAATCGCAGTGTAGACCCTCATCTCGTGAAATAAGCTCGTTGGAGAAAGTAAG 738498 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGA 42162 || ||||| ||||| | |||||| ||||| ||||| || Sbjct 738499 CCCTGGCATGAGGCCCCTCTTTTTCAGCCAGAATATGGA 738537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671122505412400