Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1917 107 2e-18 seq1705 98.7 1e-15 seq1889 91.5 1e-13 seq1943 82.4 8e-11 >seq1917 Length=1730829 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || |||||||| || | || | || ||||| ||||| || |||||||| Sbjct 508356 CCTCCGCGCAAACGCAAGACCAGGTGCAAGGTCGATTCCTTTTGGATATTGTAATCAGCA 508297 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| | ||| ||||||||| |||||| ||| ||||||||||| || Sbjct 508296 AGGGTGCGGCCATCTTCTAATTGCTTACCAGCAAAGATCAAACGCTGCTGATCGGGCGGA 508237 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||||| || | | || | ||||| | | ||| || Sbjct 508236 ATCCCTTCCTTGTCTTGGATTTTCGTCTTCACGTTGTCAATTGTGTCAGAGCTTTCGACC 508177 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | || || |||||||| ||||| || || |||||||| Sbjct 508176 TCAAGCGTGATTGTTTTACCGGTCAAGGTTTTAACAAAGATTTGCAT 508130 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| ||||| || || | |||||||| | || ||||||||||| |||||||| || Sbjct 508129 GCCACCTCGCAATCGTAGGACTAAATGCAAGGTTGATTCTTTTTGGATGTTGTAGTCTGC 508070 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| || || | |||||| || || | || || | ||||||||||||||| Sbjct 508069 CAAGGTGCGACCATCCTCCAATTGTTTGCCGGCGAAAATAAGCCTTTGCTGATCGGGAGG 508010 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGC-TGTTCCACCGTGTCCGTGGGTTCTA 143135 |||||||| ||||| | | | || || ||| | | || | |||||| | | || | Sbjct 508009 AATGCCTTCCTTGTC-TTGAATCTTCGTCTTAACGTTGTCAATCGTGTCAGAGCTCTCCA 507951 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || | || | ||||| || ||||| || || || || |||||||| Sbjct 507950 CCTCCAAGGTGATAGTCTTCCCCGTCAACGTCTTCACAAAGATTTGCAT 507902 >seq1705 Length=561313 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||||| || || || | ||||| || || || |||||||| || Sbjct 93159 GCCACCCCGAAGACGCAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCAGC 93218 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| |||||||| || || || || | |||||||| || ||||||||||| Sbjct 93219 CAGGGTGCGACCATCTTCGAGCTGCTTGCCGGCGAAAATCAGACGCTGTTGATCGGGAGG 93278 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| || ||||| ||||||| ||| | | || | || || | || || || Sbjct 93279 AATGCCCTCCTTGTCCTGAATTTTTGTTTTCACATTGTCGATAGTATCAGAGGACTCGAC 93338 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||| || | |||||||| |||| || || ||||| || ||||| ||| Sbjct 93339 CTCAAGCGTGATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATGGCT 93390 >seq1889 Length=1415477 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/237 (68%), Gaps = 12/237 (5%) Strand=Plus/Minus Query 142952 ACATGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAA 143011 ||||| ||||| | ||||| | ||| || |||| |||||||| ||||| ||||||||| Sbjct 1325964 ACATG-CCTCCCCTCAAACGAAGAACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAA 1325906 Query 143012 TCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCG 143071 |||| || || || | || || |||||| | |||| || ||||| ||| Sbjct 1325905 TCGCCCA-----------TCCTCCAACTGCTTCCCAGCAAAAATCAACCGCTGCTGGTCG 1325857 Query 143072 GGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGT 143131 || || | ||||| ||||| |||||| || | | || | ||||||| | Sbjct 1325856 GGTGGAGTACCTTCCTTGTCCTGAATTTTGGTCTTGACATCATCGATTGTGTCCGAGCTC 1325797 Query 143132 TCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 ||||| |||| || | ||||||||| |||| | || || || || |||||| || Sbjct 1325796 TCTACCTCAAGCGTGATCGTCTTGCCCCTCAAGGACTTCACAAAGATCTGCATACCT 1325740 >seq1943 Length=2190071 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| || |||| || || || | || || || || || ||||||||||| | Sbjct 1470298 CCTCCTCTCAAGCGCAGGACCAAGTGCAGGGTGGACTCCTTCTGAATGTTGTAATCAGCC 1470239 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| ||||| || || ||| |||| || | |||||||| || || Sbjct 1470238 AAAGTACGACCATCTTCCAGTTGCTTGCCGGCAAAGATAAGTCTCTGCTGATCCGGGGGA 1470179 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||| || || | | || | ||||| | ||| ||| Sbjct 1470178 ATTCCTTCTTTGTCCTGAATCTTAGTCTTCACGTTGTCGATGGTGTCAGAACTTTCCACT 1470119 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| || ||||| || || || |||||||||||| Sbjct 1470118 TCTAATGTGATAGTCTTCCCCGTCAACGTCTTAACAAATATTTGCATA 1470071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507001788016800