Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1698 111 2e-19 seq1886 109 8e-19 >seq1698 Length=569538 Score = 111 bits (122), Expect = 2e-19 Identities = 398/613 (65%), Gaps = 27/613 (4%) Strand=Plus/Minus Query 127101 TTTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGT 127160 ||| | ||| ||||| | ||| || || || || || ||| ||||||| || || ||||| Sbjct 214732 TTTCCTGTAGAAGATCATTCCCGCGCGGGGTCCCCTCAGACTCTTGTGGGTCGTGGTGGT 214673 Query 127161 CACAATGTCACAATACTCAAAGGGGCCAGGAATGACTT--TGCCCGCAATCAAGCCCGCA 127218 ||| | ||||| || ||||| || | | |||| || || | || || | Sbjct 214672 CACCACATCACAGTAATCAAATGGTT---GGTTCACTTCCTGGGCGGCCACGAGACCACT 214616 Query 127219 AT-GTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCG 127277 | |||||| |||||| ||||| || || || | ||| ||||| | || || Sbjct 214615 GTAGTGTGCCATATCGCACATCAACAGGGCTCCAACCTTATCAGCAATAGTCCTGAGCCG 214556 Query 127278 TCTATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAA 127337 | ||||||| || | |||||| || || | || || | | |||| ||| Sbjct 214555 TGCATAGTCCCAGTCTCTAGGATATGCGCTTCCTCCAGAGATAATCATCTTAGGACGGAA 214496 Query 127338 -TAGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCT 127396 | |||| | |||| | | || | || |||| | |||||||| | ||||| Sbjct 214495 GTCCATTGCCT-TCTCCTCCAACTTCTCGTAATCGATGTATCCAGTCTCGTAGTTCACCT 214437 Query 127397 TGTACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTTG-------CGGA----- 127444 |||| |||| ||| || ||||| | ||| ||||| || | || | || Sbjct 214436 TGTAAGGCAAGCTCTCAAAAAAAATTGAAGTAGCAGAGATTTTCTTCCCGCCAGATGTGT 214377 Query 127445 ---ATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCG 127501 ||||||| |||| ||| || || ||| || || || |||||||| | | |||| | Sbjct 214376 AGTATCCGTGAGTCAAGTGACCCCCCGAGGGAAGGTCCAGGCCCATGATGCGATCGTGAG 214317 Query 127502 GTTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACAC 127561 | || | | ||||||| || || ||||| || ||||| ||||| || |||||| Sbjct 214316 GGTTGAGAAGCGCAGTGTAAACAGCGAAGTTAGCAGGGGAGCCAGAGTAGGGCTGTACAT 214257 Query 127562 ACACTCCCCA-TTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCT-AG 127619 ||| ||||| ||| || || ||| | ||| || | | || | ||| ||| || Sbjct 214256 TCACACCCCACTTCTCGCT-GTCCAAGTGGAAAGCCTTCA-ACGCCCTGGCTTTGCACAG 214199 Query 127620 CAGTTCGATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTC 127679 ||||| ||||||| ||||| |||||||||||||| | |||||| ||||| Sbjct 214198 GTTCTCGATCTGATCGATGAACTCATTACCACCATAGTACCTGGCTCCGGGGAGCCCCTC 214139 Query 127680 CGAGTACTTGTTG 127692 |||||||||||| Sbjct 214138 TGAGTACTTGTTG 214126 >seq1886 Length=1372085 Score = 109 bits (120), Expect = 8e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 125418 GCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCG 125477 || || ||| | |||| |||||| ||| ||||| || |||||||| || |||||| Sbjct 694489 GCAGAGAGAATCCTGGCTTTCGCCTGCGTCGAGGGGATTTTCTTTTCAGGGAGTTTTTGC 694548 Query 125478 GCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTT 125537 ||||||||||||||||||||| | || || ||||| || || ||| ||||| | Sbjct 694549 GCCATCTTTTGGCTCAAGAAGAGAGGTCTTATGCCAGGGCTTACGTTTTCCAACGAACTC 694608 Query 125538 ATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 || || ||||| |||||||| ||||| || ||||| Sbjct 694609 ATCTCACGAGATGAGGGCCTGCACTGCGATTTTGC 694643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741040766152400