Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq1814 109 5e-19 seq1762 107 2e-18 seq1943 95.1 1e-14 seq1972 89.7 4e-13 seq1957 82.4 6e-11 seq1889 82.4 6e-11 seq1660 82.4 6e-11 >seq1814 Length=924488 Score = 109 bits (120), Expect = 5e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| |||||||| | ||||| |||||| || |||||||| || || |||||||||||| Sbjct 462634 CCTCCCCGCAACCTAAGCACCAAGTGCAAGGTGGACTCCTTCTGTATGTTGTAATCCGCC 462575 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | ||||||||| || || |||||| | || | |||||||| || || Sbjct 462574 AGCGTTCTACCGTCCTCCAATTGCTTGCCCGCAAAGATCAACCTCTGCTGGTCAGGAGGA 462515 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| || || || ||| || || | ||| |||||| |||| Sbjct 462514 ATCCCCTCCTTATCCTGGATCTTCGTCTTCACGTTATCGATTGTATCGGAGCTCTCCACC 462455 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAA 19047 |||| ||| ||||| || || || || || || ||||| || ||||| || || Sbjct 462454 TCGAGGGTGATGGTCTTCCCAGTCAAGGTCTTTACAAAGATCTGCATCTTGAA 462402 >seq1762 Length=742324 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | ||||| ||||| | ||||| || || |||||||| ||||| ||||| ||| Sbjct 519197 CCTCCCCTCAACCGCAACACAAGATGCAAGGTCGATTCCTTTTGGATATTATAATCAGCC 519138 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || |||| ||||| || ||||| ||| ||||||| |||||||| || || Sbjct 519137 AAAGTACGACCGTCTTCCAGTTGCTTACCTGCAAAAATAAGCCTCTGCTGGTCGGGAGGG 519078 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGT-TTTACCTGGCCGACAGTATCGCCAGGCTCCGT 18993 | |||||| ||||| || || ||| ||||| | | | ||||||| | ||| Sbjct 519077 ATGCCCTCCTTGTCCTGTATCTT-TGTCTTTACATTATCAATAGTATCGGAACTTTCCAC 519019 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || || || || || || || || ||||||||||||||||| Sbjct 519018 CTCCAATGTTATCGTCTTCCCCGTCAATGTCTTGACAAAAATTTGCAT 518971 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| || || ||||| | |||||| ||||||||||| ||||||||||||||||| Sbjct 519425 CCTCCTCTCAGCCGCAACACAAGGTGCAAGGTAGACTCCTTCTGAATATTGTAATCCGCG 519366 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | ||||||| ||| || || || | || | || ||||||||| || Sbjct 519365 AGAGTTCGCCCATCCTCCAACTGCTTCCCAGCGAAGATCAATCGCTGCTGATCGGGAGGA 519306 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGT-TTTACCTGGCCGACAGTATCGCCAG-GCTCCG 18992 | || || ||||| ||| || ||| || || | | ||| ||||| | || ||| Sbjct 519305 ATACCTTCCTTGTCTTGAATCTT-TGTCTTCACGTTGTCGATTGTATC-CGAGCTCTCGA 519248 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || || || || || || || || || ||||| |||||||| Sbjct 519247 CCTCCAACGTGATTGTCTTGCCCGTCAACGTCTTCACAAAGATTTGCAT 519199 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 |||||||| |||||||| |||||||||||||| || | || | ||||||| ||| Sbjct 518717 TGCAACGTCGACTCCTTCTGAATATTGTAATCGGCAAGGGTGCGACCATCCTCCAACTGC 518658 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 ||||| || | || | | |||||| || || | |||||| ||||| ||| || Sbjct 518657 TTACCGGCGAAGATCAACCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTG 518598 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 || || | ||| |||||| | || ||| || | ||| ||||| ||||| || Sbjct 518597 GTCTTCACATTATCGATAGTATC-CGAGCTCTCGACCTCCAAGGTGATGGTCTTACCGGT 518539 Query 19018 TAAAGTTTTGACAAAAATTTGCATTTTAAA 19047 | || || |||||||| ||||| ||||| Sbjct 518538 CAGGGTCTTCACAAAAATCTGCATCTTAAA 518509 >seq1943 Length=2190071 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| ||| | | |||| ||||| || |||||||| ||||| |||||||| ||| Sbjct 1470298 CCTCCTCTCAAGCGCAGGACCAAGTGCAGGGTGGACTCCTTCTGAATGTTGTAATCAGCC 1470239 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | || ||||| || || || ||| | |||||||||||||||||| ||| Sbjct 1470238 AAAGTACGACCATCTTCCAGTTGCTTGCCGGCAAAGATAAGTCTCTGCTGATCCGGGGGA 1470179 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || |||||||| ||| || || || | | ||| || || | ||| | Sbjct 1470178 ATTCCTTCTTTGTCCTGAATCTTAGTCTTCACGTTGTCGATGGTGTCAGAACTTTCCACT 1470119 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || || || || || || || || || ||||| |||||||| Sbjct 1470118 TCTAATGTGATAGTCTTCCCCGTCAACGTCTTAACAAATATTTGCAT 1470072 >seq1972 Length=2788724 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | |||||| | |||| |||||| || |||||||| || || |||||||| ||| Sbjct 1775074 CCTCCCCTCAACCTAAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAATCAGCC 1775133 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | ||||||||| || || || || | || | |||||||| ||| || Sbjct 1775134 AAAGTGCGGCCGTCCTCCAATTGCTTCCCTGCGAAGATCAACCTCTGCTGGTCCGGAGGA 1775193 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| ||||| ||| ||| || || | | | || || |||| Sbjct 1775194 ATCCCCTCCTTGTCCTGAATCTTCGTCTTCACGTTATCAATCGTGTCAGAGCTCTCCACC 1775253 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| ||||| || ||||| || || || |||||||||||||| Sbjct 1775254 TCCAGGGTGATGGTCTTCCCTGTCAACGTCTTCACAAAAATTTGCAT 1775300 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | |||||| | |||| |||||| || |||||||| || || |||||||| ||| Sbjct 1798730 CCTCCCCTCAACCTAAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAATCAGCC 1798671 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | ||||||||| || || || || | || | |||||||| ||| || Sbjct 1798670 AAAGTGCGGCCGTCCTCCAATTGCTTCCCTGCGAAGATCAACCTCTGCTGGTCCGGAGGA 1798611 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| ||||| ||| ||| || || | | | || || |||| Sbjct 1798610 ATCCCCTCCTTGTCCTGAATCTTCGTCTTCACGTTATCAATCGTGTCAGAGCTCTCCACC 1798551 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| ||||| || ||||| || || || |||||||||||||| Sbjct 1798550 TCCAGGGTGATGGTCTTCCCTGTCAACGTCTTCACAAAAATTTGCAT 1798504 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | |||||| | |||| |||||| || |||||||| || || |||||||| ||| Sbjct 1798958 CCTCCCCTCAACCTAAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAATCAGCC 1798899 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | ||||||||| || || || || | || | |||||||| ||| || Sbjct 1798898 AAAGTGCGGCCGTCCTCCAATTGCTTCCCTGCGAAGATCAACCTCTGCTGGTCCGGAGGA 1798839 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| ||||| ||| ||| || || | | | || || |||| Sbjct 1798838 ATCCCCTCCTTGTCCTGAATCTTCGTCTTCACGTTATCAATCGTGTCAGAGCTCTCCACC 1798779 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| ||||| || ||||| || || || |||||||||||||| Sbjct 1798778 TCCAGGGTGATGGTCTTCCCTGTCAACGTCTTCACAAAAATTTGCAT 1798732 >seq1957 Length=2436183 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| |||||| ||||||||||| || || ||||| || || | || | | ||||| Sbjct 68967 CACCAAGTGCAAGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCCATCCTC 68908 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || || | || || |||||||| || || | |||||| ||||| Sbjct 68907 CAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTG 68848 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| ||| || || | | ||| ||| ||| | ||| |||| || ||||| || Sbjct 68847 AATCTTCGTCTTCACATTGTCGATAGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTT 68788 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || || || || || ||||| Sbjct 68787 GCCCGTCAGGGTCTTCACGAAGATCTGCAT 68758 >seq1889 Length=1415477 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| |||||| ||||| | ||||| ||||||||||| ||||| || ||||| || Sbjct 1325742 CCTCCTCTCAACCTCAACACAAGGTGCAGTGTAGACTCCTTCTGAATGTTATAATCAGCA 1325683 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATC 18927 | ||| | ||||||||| ||| || || || | || | |||||||| || Sbjct 1325682 AGCGTTCTACCGTCCTCCAACTGCTTGCCGGCGAAGATCAACCTCTGCTGGTC 1325630 >seq1660 Length=444603 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| |||||| ||||||||||| || || ||||| || || | || | | ||||| Sbjct 434483 CACCAAGTGCAAGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCCATCCTC 434542 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || || | || || |||||||| || || | |||||| ||||| Sbjct 434543 CAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTG 434602 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| ||| || || | | ||| ||| ||| | ||| |||| || ||||| || Sbjct 434603 AATCTTCGTCTTCACATTGTCGATAGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTT 434662 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || || || || || ||||| Sbjct 434663 GCCCGTCAGGGTCTTCACGAAGATCTGCAT 434692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414562745314060