Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1943 102 5e-17 seq1762 100 2e-16 seq1972 91.5 9e-14 seq1917 82.4 5e-11 >seq1943 Length=2190071 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 |||||| || | |||||||||| || | || ||||| || || || |||||||| | Sbjct 1470071 ACCGCCCCTCAGGCGCAACACCAGGTGAAGCGTGGACTCCTTCTGAATGTTGTAATCGGC 1470012 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 || | | | || ||||| |||||||| ||| || || ||||||||||| | || Sbjct 1470011 CAGAGTACGCCCATCCTCCAACTGCTTTCCGGCAAAAATCAATCGTTGCTGGTCAGGTGG 1469952 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTT-TGAATCGTGTCGTTGGGTTGAA 33320 || |||||||| || |||| | || ||| ||| | ||| || || | | || Sbjct 1469951 AATACCTTCTTTGTCTTGAATCTTC-GTCTTAACGTTATCAATAGTATCTGAGCTCTCAA 1469893 Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 | |||| || ||||| || ||||| || ||||| ||||| ||||||||| Sbjct 1469892 CTTCCAACGTAATCGTCTTCCCCGTCAGCGTTTTGACGAATATTTGCATG 1469843 >seq1762 Length=742324 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| || || ||||||||||| | |||||| ||||| || ||||| ||||| ||||||| Sbjct 519198 ACCTCCCCTCAACCGCAACACAAGATGCAAGGTCGATTCCTTTTGGATATTATAATCAGC 519139 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 |||| | | ||| |||| |||||| || ||| || | | |||||||| | || Sbjct 519138 CAAAGTACGACCGTCTTCCAGTTGCTTACCTGCAAAAATAAGCCTCTGCTGGTCGGGAGG 519079 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGT-TTTACTGTTTGAATCGTGTCGTTGGGTTGAA 33320 ||||| || || || ||| ||| ||||| | | ||| || ||| || | Sbjct 519078 GATGCCCTCCTTGTCCTGTATC-TTTGTCTTTACATTATCAATAGTATCGGAACTTTCCA 519020 Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | |||| |||||||| || ||||| | || || || ||||||||||| Sbjct 519019 CCTCCAATGTTATCGTCTTCCCCGTCAATGTCTTGACAAAAATTTGCAT 518971 >seq1972 Length=2788724 Score = 91.5 bits (100), Expect = 9e-14 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || || || |||| | ||||| ||||| |||||||| || || || |||||||||| | Sbjct 1775074 CCTCCCCTCAACCTAAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAATCAGCC 1775133 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 ||| || | ||| ||||||||||| || || || || | |||||||||| || Sbjct 1775134 AAAGTGCGGCCGTCCTCCAATTGCTTCCCTGCGAAGATCAACCTCTGCTGGTCCGGAGGA 1775193 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || || || || || |||| | || || | | ||||||||| | | || Sbjct 1775194 ATCCCCTCCTTGTCCTGAATCTTCGTCTTCACGTTATCAATCGTGTCAGAGCTCTCCACC 1775253 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 ||||| || || || || || || | || || || |||||||||||| Sbjct 1775254 TCCAGGGTGATGGTCTTCCCTGTCAACGTCTTCACAAAAATTTGCATG 1775301 Score = 91.5 bits (100), Expect = 9e-14 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || || || |||| | ||||| ||||| |||||||| || || || |||||||||| | Sbjct 1798730 CCTCCCCTCAACCTAAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAATCAGCC 1798671 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 ||| || | ||| ||||||||||| || || || || | |||||||||| || Sbjct 1798670 AAAGTGCGGCCGTCCTCCAATTGCTTCCCTGCGAAGATCAACCTCTGCTGGTCCGGAGGA 1798611 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || || || || || |||| | || || | | ||||||||| | | || Sbjct 1798610 ATCCCCTCCTTGTCCTGAATCTTCGTCTTCACGTTATCAATCGTGTCAGAGCTCTCCACC 1798551 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 ||||| || || || || || || | || || || |||||||||||| Sbjct 1798550 TCCAGGGTGATGGTCTTCCCTGTCAACGTCTTCACAAAAATTTGCATG 1798503 Score = 91.5 bits (100), Expect = 9e-14 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || || || |||| | ||||| ||||| |||||||| || || || |||||||||| | Sbjct 1798958 CCTCCCCTCAACCTAAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAATCAGCC 1798899 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 ||| || | ||| ||||||||||| || || || || | |||||||||| || Sbjct 1798898 AAAGTGCGGCCGTCCTCCAATTGCTTCCCTGCGAAGATCAACCTCTGCTGGTCCGGAGGA 1798839 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || || || || || |||| | || || | | ||||||||| | | || Sbjct 1798838 ATCCCCTCCTTGTCCTGAATCTTCGTCTTCACGTTATCAATCGTGTCAGAGCTCTCCACC 1798779 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 ||||| || || || || || || | || || || |||||||||||| Sbjct 1798778 TCCAGGGTGATGGTCTTCCCTGTCAACGTCTTCACAAAAATTTGCATG 1798731 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || || || |||| | ||||| ||||| |||||||| || || || |||||||||| | Sbjct 1775302 CCTCCCCTCAACCTAAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAATCAGCC 1775361 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 ||| || | ||| ||||||||||| || || || || | |||||||||| || Sbjct 1775362 AAAGTGCGGCCGTCCTCCAATTGCTTCCCTGCGAAGATCAACCTCTGCTGGTCCGGAGGA 1775421 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || || || || || |||| | || || | | ||||||||| | | || Sbjct 1775422 ATCCCCTCCTTGTCCTGAATCTTCGTCTTCACGTTATCAATCGTGTCAGAGCTCTCCACC 1775481 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 ||||| || || || || || || | || || || || || ||||| || Sbjct 1775482 TCCAGGGTGATGGTCTTCCCTGTCAACGTCTTCACAAATATCTGCATCTT 1775531 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || || || |||| | ||||| ||||| |||||||| || || || |||||||||| | Sbjct 1798502 CCTCCCCTCAACCTAAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAATCAGCC 1798443 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 ||| || | ||| ||||||||||| || || || || | |||||||||| || Sbjct 1798442 AAAGTGCGGCCGTCCTCCAATTGCTTCCCTGCGAAGATCAACCTCTGCTGGTCCGGAGGA 1798383 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || || || || || |||| | || || | | ||||||||| | | || Sbjct 1798382 ATCCCCTCCTTGTCCTGAATCTTCGTCTTCACGTTATCAATCGTGTCAGAGCTCTCCACC 1798323 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 ||||| || || || || || || | || || || || || ||||| || Sbjct 1798322 TCCAGGGTGATGGTCTTCCCTGTCAACGTCTTCACAAATATCTGCATCTT 1798273 >seq1917 Length=1730829 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| |||||| ||||| || ||||| || || || |||||||| | |||| || | Sbjct 507660 CGCAGCACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGCCAAAGTGCGACCA 507601 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||| ||||| || ||| || | | ||||||||||| |||||||| || || Sbjct 507600 TCTTCCAACTGCTTCCCTGCAAAGATGAGCCTTTGCTGGTCCGGCGGTATGCCCTCCTTG 507541 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || |||| ||| || | | || |||||| | | || || || || || Sbjct 507540 TCTTGAATCTTGGCTTTGACGTTGTCGATAGTGTCGGAGCTCTCGACCTCAAGGGTGATG 507481 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| | ||| || || || || ||||| Sbjct 507480 GTCTTCCCCGTCAAAGTCTTCACAAAGATCTGCAT 507446 Score = 82.4 bits (90), Expect = 5e-11 Identities = 152/222 (68%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 33152 AACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGT 33211 || ||||| |||| ||||| ||||| || ||||| ||||||||||||| | || | Sbjct 508347 AAACGCAAGACCAGGTGCAAGGTCGATTCCTTTTGGATATTGTAATCAGCAAGGGTGCGG 508288 Query 33212 TGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCT 33271 || || |||||||| ||| ||| || ||||| ||||| || | || || ||||| Sbjct 508287 CCATCTTCTAATTGCTTACCAGCAAAGATCAAACGCTGCTGATCGGGCGGAATCCCTTCC 508228 Query 33272 TT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGA 33328 || || | | ||| | || || | | ||| ||||| | || || || || Sbjct 508227 TTGTCTTGGATTTTCGTC---TTCACGTTGTCAATTGTGTCAGAGCTTTCGACCTCAAGC 508171 Query 33329 GTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || ||||| || || | ||||| || || ||||||||| Sbjct 508170 GTGATTGTTTTACCGGTCAAGGTTTTAACAAAGATTTGCATG 508129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318769868647020