Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq380 143 3e-29 >seq380 Length=1266 Score = 143 bits (158), Expect = 3e-29 Identities = 186/256 (73%), Gaps = 6/256 (2%) Strand=Plus/Plus Query 6482 GCTTCACCAAAACAAACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCTTGAATA 6541 ||||| |||||| |||||||||||||||||| ||||| | | || || |||||||| Sbjct 38 GCTTCTCCAAAAGCAACTGCTTTCGCTGCGATTACATGCATTAATGGACCACCTTGAATT 97 Query 6542 CCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGAATGAGG 6601 || ||||| || | || | |||||| || | || || ||| |||||| | Sbjct 98 CCAGGGAAAATCGATTTATCGATTTTCTTCGCAAATTCC---TCTTTACAAAGAATCATT 154 Query 6602 CCACCACGAGGGCCGCGCAAAGTTTTATGAGTTGTAGTAGTAACAACGTCGGCACCCCAT 6661 ||||||||||| || |||||||||||||| || || || ||||||| ||| ||| | Sbjct 155 CCACCACGAGGTCCACGCAAAGTTTTATGTGTAGTTGTTGTAACAAAGTCAGCA---TAA 211 Query 6662 TTGAGTGGATTAGCGTGAAGACGAGCAGCAACAAAGCCAGCAAAATGGGCCATATCGACC 6721 | ||||| || || | || ||||| |||||||||| ||| |||||||| ||| Sbjct 212 GGAACAGGATTTTGATGTAGTCCTGCTGCAACTAAGCCAGCAATATGAGCCATATCCACC 271 Query 6722 ATCAATTTGGCTCCAA 6737 || || | |||||||| Sbjct 272 ATTAAATAGGCTCCAA 287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555349385340400