Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq1762 104 2e-17 seq1943 98.7 8e-16 seq1917 98.7 8e-16 >seq1762 Length=742324 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||| | |||| |||||| | ||| | || ||||| ||||| || || ||||| || Sbjct 519197 CCTCCCCTCAACCGCAACACAAGATGCAAGGTCGATTCCTTTTGGATATTATAATCAGCC 519138 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | ||||||| ||| || || ||| ||||||||||||| || ||| || Sbjct 519137 AAAGTACGACCGTCTTCCAGTTGCTTACCTGCAAAAATAAGCCTCTGCTGGTCGGGAGGG 519078 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||| || ||||| || ||| || || | ||| || |||| | |||| Sbjct 519077 ATGCCCTCCTTGTCCTGTATCTTTGTCTTTACATTATCAATAGTATCGGAACTTTCCACC 519018 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| || || || || || ||||| || ||||||||||||||||| Sbjct 519017 TCCAATGTTATCGTCTTCCCCGTCAATGTCTTGACAAAAATTTGCAT 518971 >seq1943 Length=2190071 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| || | || ||||| || || || || || || || ||||||||||| || Sbjct 1470298 CCTCCTCTCAAGCGCAGGACCAAGTGCAGGGTGGACTCCTTCTGAATGTTGTAATCAGCC 1470239 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||||| ||| ||||| ||| | ||||| ||||| ||||| ||| Sbjct 1470238 AAAGTACGACCATCTTCCAGTTGCTTGCCGGCAAAGATAAGTCTCTGCTGATCCGGGGGA 1470179 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| ||| || ||||| | | | | | || | |||| | Sbjct 1470178 ATTCCTTCTTTGTCCTGAATCTTAGTCTTCACGTTGTCGATGGTGTCAGAACTTTCCACT 1470119 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | || || || || || |||||||| || ||||| |||||||| Sbjct 1470118 TCTAATGTGATAGTCTTCCCCGTCAACGTCTTAACAAATATTTGCAT 1470072 >seq1917 Length=1730829 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || ||||| || | | || ||||| | || ||||||||||| |||||||| || || Sbjct 508128 CCACCTCGCAATCGTAGGACTAAATGCAAGGTTGATTCTTTTTGGATGTTGTAGTCTGCC 508069 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || | ||| |||||||||||||| || |||||||||| || |||||| || Sbjct 508068 AAGGTGCGACCATCCTCCAATTGTTTGCCGGCGAAAATAAGCCTTTGCTGATCGGGAGGA 508009 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGT 20160 | |||||| ||||| ||| || || || | | ||| | || || | ||| Sbjct 508008 ATGCCTTCCTTGTCTTGAATCTTCGTCTTAACGTTGTCAATCGTGTC-AGAGCTCTCCAC 507950 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||| || || || || |||||||| || ||||| |||||||| Sbjct 507949 CTCCAAGGTGATAGTCTTCCCCGTCAACGTCTTCACAAAGATTTGCAT 507902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419577023699190