Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1639 95.1 1e-14 seq1762 91.5 1e-13 seq1901 86.0 5e-12 seq1862 84.2 2e-11 >seq1639 Length=407714 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 ||||| || ||||| || |||||| || |||||||| || || | || | ||| Sbjct 34855 AACACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGACCATCC 34796 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 ||||||||||| ||| || ||||||| |||||||| || || | | ||||||||| Sbjct 34795 TCCAGCTGCTTTCCGGCGAAAATTAATCGCTGCTGGTCAGGAGGAATTCCCTCCTTGTCC 34736 Query 48635 ATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGG 48692 ||| || ||||| | | || |||||||| | ||| ||| | || || | Sbjct 34735 TGAATCTTGGTCTTGACGTTGTCG--ATGGTATCCGAGCTCTCGACCTCCAAGGTAATTG 34678 Query 48693 TTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | || || || ||||||||||| || ||||||||| Sbjct 34677 TCTTCCCCGTCAGAGTTTTCACGAAGATCTGCATC 34643 >seq1762 Length=742324 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| ||||| |||||||| || || || || | ||||||| |||||||||| || Sbjct 518706 CTCCTTCTGAATATTGTAATCGGC-AAGGGTGCGACCATCCTCCAACTGCTTACCGGCGA 518648 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || || |||||||| || || | | ||||||||| ||| || ||| | | Sbjct 518647 AGATCAACCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGTCTTCACAT 518588 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | || ||||| | ||| ||| | || ||||| |||||||| || || |||| Sbjct 518587 TATCGATAGTATCCGAGCTCTCGACCTCCAAGGTGATGGTCTTACCGGTCAGGGTCTTCA 518528 Query 48714 CAAAAATCTGCATC 48727 |||||||||||||| Sbjct 518527 CAAAAATCTGCATC 518514 >seq1901 Length=1553398 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | |||||| | ||||| ||||| ||| ||| || || ||| |||| || || Sbjct 1019027 CCTCCCCTCAACCTAAGGACTAAGTGAAGAGTGGACTCTTTCTGGATGCTGTAGTCCGCT 1018968 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | ||| |||||||||| ||||| || | | || || | |||||| || || Sbjct 1018967 AGGGTTCGTCCGTCCTCCAGTTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGAGGA 1018908 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | |||||||||| ||| ||| ||| | | | || ||||||| ||| | Sbjct 1018907 ATGCCTTCCTTGTCCTGAATCTTCGTCTTCACATTGTCAATTGTATCGGAGCTCTCAACC 1018848 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || || || | ||||||||||| |||||||| Sbjct 1018847 TCAAGGGTGATGGTCTTGCCAGTCAACGTTTTCACAAAGATCTGCAT 1018801 >seq1862 Length=1177009 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || |||| | ||| | ||| || || ||||| || ||||||||||| || Sbjct 566632 ACCGCCCCGTAACCGAAGCACCAGATGCAGAGTTGATTCCTTCTGGATGTTGTAATCGGC 566691 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATC 48612 |||| ||||| ||||| | |||||||||| || | ||||| ||||||||||| Sbjct 566692 CAATGTACGCTCATCCTCTAACTGCTTACCGGCGAAGATTAAGCGCTGCTGATC 566745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421240983341990