Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1938 84.2 1e-11 seq1918 84.2 1e-11 seq1912 84.2 1e-11 seq1840 84.2 1e-11 seq1808 84.2 1e-11 >seq1938 Length=2044766 Score = 84.2 bits (92), Expect = 1e-11 Identities = 50/53 (94%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAA 11523 |||||||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct 690186 TCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAA 690134 >seq1918 Length=1754849 Score = 84.2 bits (92), Expect = 1e-11 Identities = 50/53 (94%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAA 11523 |||||||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct 1185744 TCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAA 1185796 >seq1912 Length=1657735 Score = 84.2 bits (92), Expect = 1e-11 Identities = 50/53 (94%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAA 11523 |||||||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct 1246638 TCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAA 1246586 Score = 84.2 bits (92), Expect = 1e-11 Identities = 50/53 (94%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAA 11523 |||||||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct 1254939 TCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAA 1254991 >seq1840 Length=1083997 Score = 84.2 bits (92), Expect = 1e-11 Identities = 50/53 (94%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAA 11523 |||||||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct 779233 TCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAA 779181 >seq1808 Length=920897 Score = 84.2 bits (92), Expect = 1e-11 Identities = 50/53 (94%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAA 11523 |||||||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct 844337 TCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAA 844285 Score = 84.2 bits (92), Expect = 1e-11 Identities = 50/53 (94%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAA 11523 |||||||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct 850316 TCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAA 850368 Lambda K H 0.642 0.411 0.927 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261484858021240