Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1720 188 1e-43 seq1730 174 2e-39 seq1825 158 2e-34 seq1906 150 3e-32 seq1792 140 5e-29 seq1648 138 2e-28 seq1889 134 2e-27 seq1872 131 3e-26 seq1710 131 3e-26 seq1856 111 2e-20 seq1613 107 3e-19 >seq1720 Length=622818 Score = 188 bits (208), Expect = 1e-43 Identities = 207/273 (76%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| | || || |||||||||||||| || ||||||||||| || || Sbjct 305348 GCCAAGCGCCATCGCAAGGTC-CTACGAGATAACATCCAGGGGATCACCAAGCCCGCCAT 305406 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| |||||||| |||||||| |||||| || ||| ||| | ||||| |||| Sbjct 305407 TCGTCGTCTCGCTCGTCGAGGTGGAGTGAAGCGTATCAGTGGTTTGATTTATGAGGAGAC 305466 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| |||| || ||||| ||| ||| || | ||| ||| | || || || Sbjct 305467 TCGTGGTGTCCTGAAAATTTTCCTGGAGAACGTAATTCGTGACGCTGTGACTTACACTGA 305526 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | ||||||||||||||| |||||||| | || || || | ||||| || || Sbjct 305527 GCACGCCAGACGTAAGACTGTCACGGCCATGGATGTGGTGTACGCCCTCAAACGGCAGGG 305586 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTC 16704 | | | || ||||||||| | | || ||| Sbjct 305587 AAGGACCCTATACGGTTTTGGAGGCTGATTTTC 305619 >seq1730 Length=672549 Score = 174 bits (192), Expect = 2e-39 Identities = 195/261 (75%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | || || |||||||| || || ||||||||||| ||||| Sbjct 346329 CGCCAAGCGTCACCGGAAGGTGCTGCGTGATAACATTCAGGGTATCACCAAGCCCGCTAT 346270 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||||||||||||||| ||||| |||||| | ||| || | |||||||||| Sbjct 346269 TCGGCGTCTGGCTCGTCGTGGCGGAGTGAAGCGTATTAGTGGGCTGATTTATGAAGAGAC 346210 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || ||||||||||| || ||| || ||| ||||| || ||| || || Sbjct 346209 TCGTGGCGTATTGAAGATCTTTCTGGAGAATGTCATCAGAGATGCAGTCACCTACACTGA 346150 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| |||| || |||||||| || | |||||| | || ||||| ||||| | || || Sbjct 346149 GCATGCTAGGCGCAAGACTGTGACGGCTATGGATGTTGTGTATGCCTTGAAGAGGCAGGG 346090 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | ||||||||||||| Sbjct 346089 GCGAACCCTTTATGGTTTTGG 346069 >seq1825 Length=979210 Score = 158 bits (174), Expect = 2e-34 Identities = 192/262 (73%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| | | ||| || || || |||||||| ||||||||||| ||||| Sbjct 172638 CGCCAAGCGTCACAGGAAGGTTCTGCGTGACAATATCCAAGGGATCACCAAGCCTGCTAT 172579 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || ||||| ||||||||||| |||||| || |||||| | ||||| |||| Sbjct 172578 CCGACGCCTCGCTCGCCGTGGTGGAGTGAAGCGTATCAGTGGATTAATTTATGAGGAGAC 172519 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || ||||| || ||| | ||| ||||| |||||| | ||| || || Sbjct 172518 TCGTGGAGTGTTGAAAATTTTCTTGGAGAATGTTATTAGGGATGCTGTTACCTACACGGA 172459 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| ||| ||||| || || | ||||| | || ||||| ||||| | || || Sbjct 172458 GCACGCTCGACGGAAGACCGTGACGGCGATGGACGTGGTGTATGCCTTGAAGAGACAGGG 172399 Query 16672 CCGTAAGATTTATGGTTTTGGA 16693 |||| | |||||||| ||| Sbjct 172398 GCGTACCTTGTATGGTTTCGGA 172377 >seq1906 Length=1618554 Score = 150 bits (166), Expect = 3e-32 Identities = 194/268 (72%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | ||| || |||||||| || || ||||||||||| || || Sbjct 1546701 CGCGAAGCGTCATCGAAAGGTTCTGCGTGATAACATTCAGGGGATCACCAAGCCCGCCAT 1546642 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| | | || || || ||||| || || ||| |||| || |||| Sbjct 1546641 CCGGCGCTTGGCTAGGAGAGGCGGCGTGAAGCGCATCAGCGGTTTGATCTACGAGGAGAC 1546582 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| |||| ||||| | ||| ||| || | ||||||| | ||| || || Sbjct 1546581 TCGCGGTGTGCTGAAAATCTTTTTGGAGAACGTCATTCGTGATGCTGTGACCTACACTGA 1546522 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | || |||||||| ||| | |||||| |||| ||||| |||| || ||||| Sbjct 1546521 GCACGCCAGGCGCAAGACTGTGACCGCAATGGATGTCGTGTATGCGCTGAAGCGACAAGG 1546462 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | |||| || || ||| | ||| Sbjct 1546461 CCGGACTCTTTACGGCTTCGGAGGCTAA 1546434 >seq1792 Length=855790 Score = 140 bits (154), Expect = 5e-29 Identities = 179/247 (72%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||| ||||| ||||| || ||||| ||||| || ||||| |||||||||||| Sbjct 18779 CTGCGTGATAATATCCAGGGAATAACGAAGCCTGCTATTCGGCGTCTCGCTCGTCGTGGT 18838 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| ||||| || || ||| | || || |||| ||| | || ||||||||||| Sbjct 18839 GGAGTGAAGCGGATCAGCGGTTTGATATACGAGGAGACTCGAGGCGTACTGAAGATCTTC 18898 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | | | ||||||| |||||| | || || ||||| ||| || |||||||| Sbjct 18899 TTGGAAAACGTTATCAGGGATGCTGTGACGTACACTGAGCATGCTCGGCGCAAGACTGTG 18958 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | ||||| |||| ||||| ||||| | || || || | | || || |||||| Sbjct 18959 ACTGCGATGGACGTCGTGTATGCGTTGAAGAGGCAGGGACGCACCTTGTACGGGTTTGGA 19018 Query 16694 AGTTAAT 16700 |||||| Sbjct 19019 GGTTAAT 19025 >seq1648 Length=412202 Score = 138 bits (152), Expect = 2e-28 Identities = 193/271 (71%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | | || || ||||||||||| ||||||||||| || || Sbjct 311312 CGCCAAGCGTCACCGAAAGGTTTTGCGTGACAACATCCAAGGTATCACCAAGCCTGCCAT 311253 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| |||| || | || || || ||||| || |||| || |||| ||||||| Sbjct 311252 CCGCCGTTTGGCCCGAAGAGGCGGCGTGAAGCGCATCAGTGGACTGATCTACGAAGAGAC 311193 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| || |||||||||||||| ||| || || |||||| | || || || Sbjct 311192 TCGCAGCGTGTTGAAGATCTTCCTGGAGAATGTGATTAGGGATGCTGTGACTTACACGGA 311133 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||| || ||||| || ||| ||||||| | || || || ||||| | || || Sbjct 311132 GCACGCTAGGCGCAAGACGGTGACCGCCATGGACGTGGTGTACGCGTTGAAGAGACAGGG 311073 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 || | | |||||||| ||| | ||| || Sbjct 311072 TCGAACTTTGTATGGTTTCGGAGGCTAAGCT 311042 >seq1889 Length=1415477 Score = 134 bits (148), Expect = 2e-27 Identities = 176/244 (72%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || ||||||||||| ||||||||||| || |||||||| ||||| | | ||||| Sbjct 1085323 CGCGACAACATCCAAGGCATCACCAAGCCCGCAATCCGTCGCTTGGCTAGGAGAGGTGGC 1085264 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||||| | ||| || | || || |||| ||||| ||| | |||||||| || Sbjct 1085263 GTGAAGCGTATTAGTGGGCTGATTTACGAGGAGACTCGTGGTGTCCTCAAGATCTTTCTG 1085204 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| ||| || || | || ||||||||||| | ||||||||| || ||| Sbjct 1085203 GAGATCGTCATCAGGGACGCCGTTACGTACACCGAGCACGCGAGACGTAAGACCGTGACC 1085144 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 ||||||| | || || || | ||||| |||||| | | | || || |||||| | Sbjct 1085143 GCCATGGACGTGGTGTACGCTCTCAAACGGCAAGGCAGAACCCTATACGGATTTGGAGGC 1085084 Query 16697 TAAT 16700 |||| Sbjct 1085083 TAAT 1085080 Score = 125 bits (138), Expect = 1e-24 Identities = 187/263 (71%), Gaps = 2/263 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||||||| | | | | || ||||| ||||| || || ||||| || || || | Sbjct 1025956 CGCCAAGCGTCATAGGA-AGGTGTTGCGAGACAACATTCAGGGTATCACTAAACCCGCCA 1025898 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || | || || || |||||| || ||| | | || ||||||| Sbjct 1025897 TCCGGCGCCTGGCGCGAAGAGGAGGTGTGAAGCGTATCAGTGGGCTTATTTACGAAGAGA 1025838 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||||| ||| | || || || | ||| ||| ||| |||||| | || |||| Sbjct 1025837 CTCGTGGTGTGCTCAAAATATTTTTGGAGAACGTGATCAGGGATGCTGTGACGTACACCG 1025778 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| | || |||||||| || |||||||| | |||||||||||||| || || | Sbjct 1025777 AGCACGCGAGGCGCAAGACTGTGACGGCCATGGATGTGGTCTATGCATTGAAGCGACAGG 1025718 Query 16671 GCCGTAAGATTTATGGTTTTGGA 16693 || | | | || || |||||| Sbjct 1025717 GCAGGACTCTGTACGGGTTTGGA 1025695 >seq1872 Length=1271244 Score = 131 bits (144), Expect = 3e-26 Identities = 186/262 (71%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | | | || ||||||||||| || ||||| ||||| || || Sbjct 40225 CGCGAAGCGTCATCGGAAAGTGTTGCGTGATAACATCCAGGGTATCACGAAGCCTGCGAT 40166 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||||||||| ||||| |||||| || ||| || | || || |||| Sbjct 40165 CCGGCGTCTGGCTCGTCGTGGAGGAGTGAAGCGTATCAGTGGGCTGATTTACGAGGAGAC 40106 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||||| || | ||| || ||| || || | || || || Sbjct 40105 TCGCGGCGTGCTGAAGATATTTTTGGAGAATGTGATCAGGGACGCGGTGACGTACACGGA 40046 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || ||||| || || | |||||| | || ||||| ||||| | || || Sbjct 40045 GCACGCTCGGCGGAAGACGGTGACGGCGATGGATGTGGTGTATGCGTTGAAGAGGCAGGG 39986 Query 16672 CCGTAAGATTTATGGTTTTGGA 16693 || | | |||| || || ||| Sbjct 39985 GCGGACGCTTTACGGGTTCGGA 39964 >seq1710 Length=579831 Score = 131 bits (144), Expect = 3e-26 Identities = 186/262 (71%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | | | || ||||||||||| || ||||| ||||| || || Sbjct 506483 CGCGAAGCGTCATCGGAAAGTGTTGCGTGATAACATCCAGGGTATCACGAAGCCTGCGAT 506542 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||||||||| ||||| |||||| || ||| || | || || |||| Sbjct 506543 CCGGCGTCTGGCTCGTCGTGGAGGAGTGAAGCGTATCAGTGGGCTGATTTACGAGGAGAC 506602 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||||| || | ||| || ||| || || | || || || Sbjct 506603 TCGCGGCGTGCTGAAGATATTTTTGGAGAATGTGATCAGGGACGCGGTGACGTACACGGA 506662 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || ||||| || || | |||||| | || ||||| ||||| | || || Sbjct 506663 GCACGCTCGGCGGAAGACGGTGACGGCGATGGATGTGGTGTATGCGTTGAAGAGGCAGGG 506722 Query 16672 CCGTAAGATTTATGGTTTTGGA 16693 || | | |||| || || ||| Sbjct 506723 GCGGACGCTTTACGGGTTCGGA 506744 >seq1856 Length=1158178 Score = 111 bits (122), Expect = 2e-20 Identities = 184/263 (70%), Gaps = 2/263 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| ||||| | | | || || |||||||| || || ||||| ||||| || | Sbjct 807294 CGCCAAGCGCCATCGTA-AGGTATTGCGCGATAACATTCAGGGGATCACTAAGCCTGCCA 807236 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 || | || | || | | || || || ||||| || ||| || |||||||||||| Sbjct 807235 TCAGGCGCTTAGCAAGAAGAGGAGGCGTGAAGCGCATCAGTGGTCTGATCTATGAAGAGA 807176 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || | |||||||| || ||| ||| || |||||| | ||||||| Sbjct 807175 CTCGGGGCGTGCTTAAGATCTTTCTTGAGAACGTGATTAGAGATGCTGTAACATATACCG 807116 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||| ||| || ||||| || || | |||||| | || ||||| |||| ||||| | Sbjct 807115 AGCATGCTCGGCGCAAGACCGTGACGGCTATGGATGTGGTTTATGCCCTGAAGCGTCAGG 807056 Query 16671 GCCGTAAGATTTATGGTTTTGGA 16693 || | | | |||||||||||| Sbjct 807055 GCAGAACTCTCTATGGTTTTGGA 807033 >seq1613 Length=331641 Score = 107 bits (118), Expect = 3e-19 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || |||||||| || ||||||||||| || ||| | || |||| | | ||||| Sbjct 284442 CGCGACAACATCCAGGGCATCACCAAGCCTGCCATCAGGCGATTGGCGAGGAGAGGTGGC 284501 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || ||||| || ||| | | |||||||| | ||| | ||| | |||||||| || Sbjct 284502 GTGAAGCGCATCAGTGGGCTCATATATGAAGAAACTCGCGGTGTGCTTAAGATCTTTCTG 284561 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| || || || ||| | || ||||||||||| | || ||||| || || Sbjct 284562 GAGAATGTCATTAGGGACGCTGTTACTTACACCGAGCACGCCAGGCGGAAGACCGTTACG 284621 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 |||||||| | || || || |||| || || ||||||| |||| ||||||||| Sbjct 284622 GCCATGGATGTAGTGTACGCTCTGAAGCGCCAGGGCCGTACTCTTTACGGTTTTGGA 284678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073380529070