Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq1990 675 0.0 >seq1990 Length=122890 Score = 675 bits (748), Expect = 0.0 Identities = 729/959 (76%), Gaps = 10/959 (1%) Strand=Plus/Minus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 |||||||| |||||||||||||| || |||||||| || | || ||||| || | Sbjct 54232 TTCTGCGACTGGGTTACCAGCACTGAAAACCGCCTTTACATCGGATGGTTCGGTGTTTTA 54173 Query 135434 ATGATTCCTACTCTTCTCGCAGCTGCTATCTGC-TTTATTGTTGCTTTCATCGCTGCACC 135492 |||||||||||||| | | || || |||| |||||| |||||||||| || || || Sbjct 54172 ATGATTCCTACTCTATTAACTGCAACT-TCTGTATTTATTATTGCTTTCATTGCAGCTCC 54114 Query 135493 TCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAA 135552 ||| || |||||||| || ||||| || |||||| |||||||||| | |||||||| || Sbjct 54113 TCCTGTAGATATTGATGGTATCCGTGAGCCTGTTTCTGGTTCTCTTCTTTACGGAAACAA 54054 Query 135553 CATCATCTCTGGTGCTGTTATCCCTTCTA--GCAACGCCATCGGCCTTCACTTCTATCCC 135610 ||||||||||| |||| | |||||| || ||| || ||||| | |||||||| || Sbjct 54053 CATCATCTCTGCTGCTATCATCCCTACTTCTGCA--GCTATCGGTTTGCACTTCTACCCA 53996 Query 135611 ATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTG 135670 || |||||||||||||| ||||||| ||||| || || ||||||||||| | || | Sbjct 53995 ATTTGGGAAGCTGCTTCCGTTGATGAATGGCTTTACAACGGTGGTCCTTACGAGTTAATC 53936 Query 135671 GTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTAC 135730 || | |||||| | | ||||| | ||||||||||| ||||||||||| ||| Sbjct 53935 GTTCTTCACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTAC 53876 Query 135731 CGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACT 135790 || | |||||||| |||||||| ||| || || ||||| |||||||| ||||||||| Sbjct 53875 CGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACT 53816 Query 135791 GCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGC 135850 ||||||||| || ||||||| |||| ||||| ||| ||| |||||||| | || Sbjct 53815 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGACGGTATGCCTTTAGGA 53756 Query 135851 ATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCAT 135910 || ||||| ||||| |||| |||| |||| ||||| || ||||||||||| || ||||| Sbjct 53755 ATCTCTGGTACTTTCAACTTCATGATTGTGTTCCAAGCTGAACACAACATCCTTATGCAC 53696 Query 135911 CCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCAT 135970 || ||||||||| | || || ||||| || |||||||| ||||| ||| |||||||||| Sbjct 53695 CCATTCCACATGCTTGGTGTAGCTGGTGTATTCGGTGGCTCTCTATTCAGTGCTATGCAT 53636 Query 135971 GGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTAT 136030 || || | || || || ||| | | ||||| || |||||| || || ||| Sbjct 53635 GGTTCCTTAGTAACTTCAAGTTTAATCCGTGAAACTACTGAGAATGAGTCTGCTAACGCA 53576 Query 136031 GGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTC 136090 ||||||||||| |||||||| ||||| ||||||||||| || |||||||| |||||||| Sbjct 53575 GGTTACAAGTTTGGTCAAGAGGAAGAAACTTACAACATCGTAGCTGCTCACGGTTACTTT 53516 Query 136091 GGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTT 136150 ||| | | || |||||||| || || |||||||||||||| ||||||| ||| | Sbjct 53515 GGTAGATTAATTTTCCAATACGCTAGCTTTAACAACTCTCGTTCTTTACACTTCTTCTTA 53456 Query 136151 GCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCT--ACGATGGCGT 136208 |||||||||||||| || ||||||||||| |||| | || |||| || ||||| | Sbjct 53455 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCATTAGG--TATCAGCACTATGGCTT 53398 Query 136209 TCAACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCA 136268 ||||| | || || |||||||||||||| || |||| | |||||||||| | | Sbjct 53397 TCAACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGACAGTCAAGGTCGTGTTATTA 53338 Query 136269 ACACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 |||| ||||| || | | || |||||| || |||||||| || ||||| || ||| Sbjct 53337 ACACTTGGGCTGACATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 53279 Score = 634 bits (702), Expect = 7e-177 Identities = 747/1007 (74%), Gaps = 8/1007 (1%) Strand=Plus/Minus Query 137875 TGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTT 137934 ||||||||||| | | | |||| || ||||||||||| ||||||||||| ||| |||||| Sbjct 44454 TGGATGACTGGCTAAGAAGAGACCGTTTTGTATTTGTAGGTTGGTCTGGTCTATTACTTT 44395 Query 137935 TTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCT 137994 |||| |||||||| | | ||||| ||| |||| || ||||| ||||| || | Sbjct 44394 TTCCGTGCGCTTATTTTTCTTTAGGTGGATGGTTTACAGGTACAACTTTTGTAACTTCAT 44335 Query 137995 GGTACACCCACGGGTTGGCGTCTAG---TTATCTTGAAGGCGCTAATTTCCTCACAGCAG 138051 |||| || || || ||||| ||| |||| | ||||| |||||| || || || | Sbjct 44334 GGTATACTCATGGATTGGC---TAGCTCTTATTTAGAAGGTTGTAATTTTCTAACTGCTG 44278 Query 138052 CTGTTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGT 138111 ||||||| ||||||||| || | | | ||||| | | ||| | |||||||| || Sbjct 44277 CTGTTTCTACTCCTGCTAATAGTTTAGCACATTCGTTATTACTATTATGGGGTCCAGAAG 44218 Query 138112 CTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCC 138171 | ||||||||| || || |||| ||| | || || || |||||||| || || || | Sbjct 44217 CACAAGGAGATTTCACTCGTTGGTGTCAATTAGGAGGTCTATGGACTTTCGTTGCTCTTC 44158 Query 138172 ACGGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCGTCTGGTAG 138231 | || || ||| | | || || || ||| | ||||| |||||| | || | ||| Sbjct 44157 ATGGAGCTTTTGCTTTAATAGGCTTTATGTTGCGCCAATTTGAGCTTGCTAGATCCGTAC 44098 Query 138232 GCATCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGT 138291 | ||||| || |||||||| || || ||||| || || ||||| || || || | Sbjct 44097 AATTACGTCCTTATAACGCAATTGCTTTTTCTGGCCCAATTGCTGTTTTTGTTTCTGTAT 44038 Query 138292 TCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAG 138351 | | || || || | |||||||| ||||||| ||||| || |||||||| |||| Sbjct 44037 TTTTAATTTACCCACTTGGTCAATCAGGTTGGTTTTTTGCACCTAGTTTTGGTGTTGCAG 43978 Query 138352 CAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTC 138411 |||| ||||||||| | || ||| | || ||||||||||||||||| | ||||| |||| Sbjct 43977 CAATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTTC 43918 Query 138412 ATATGATGGGCGTAGCAGGTATTCTTGGTGG-TGCTCTGCTCTGTGCTATTCATGGTGCT 138470 |||||||||| || || || | |||||| | |||||| | ||||||||||||||||| Sbjct 43917 ATATGATGGGAGTTGCTGG-AGTCTTGGGAGCTGCTCTTTTATGTGCTATTCATGGTGCA 43859 Query 138471 ACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAA 138530 || |||||||||||||| | ||||||||| || ||||||| || || ||| | Sbjct 43858 ACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAAC 43799 Query 138531 CCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATC 138590 || |||||| |||||||| ||||| |||||||| |||||||||| |||||| |||||| Sbjct 43798 CCAACTCAATCTGAAGAAACTTATTCTATGGTTACAGCTAACCGTTTCTGGTCTCAAATC 43739 Query 138591 TTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCGTC 138650 || || |||| ||| ||| || |||||| | || ||||||||||| ||||| || || Sbjct 43738 TTCGGTGTTGCATTTTCTAACAAACGTTGGTTGCATTTCTTTATGCTATTTGTACCAGTA 43679 Query 138651 ATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGTAT 138710 | ||| | |||| ||| |||||| | ||||| | ||| | || ||||||| ||| Sbjct 43678 ACTGGTTTATGGATGAGTGCTATTGGAGTAGTTGGTTTAGCTTTAAATTTACGAGCTTAT 43619 Query 138711 GATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACACC 138770 ||||| || || || |||||||||||||| ||||| |||||||| || || || ||||| Sbjct 43618 GATTTTGTTTCTCAGGAAATTCGTGCAGCTGAAGACCCTGAATTTGAAACTTTTTACACT 43559 Query 138771 AAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACCTCAC 138830 || || |||||||| ||||||||| | ||||| |||||||| || ||||| ||||| Sbjct 43558 AAAAATATTCTTCTAAATGAAGGTATTCGTGCTTGGATGGCAGCTCAAGATCAGCCTCAT 43499 Query 138831 GAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 ||||| |||| || || || || || | ||| | || |||||||| Sbjct 43498 GAAAATCTTGTATTCCCAGAGGAGGTTCTACCACGTGGAAACGCTCT 43452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627952379296000