Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq1990 605 5e-168 seq1820 84.2 4e-11 >seq1990 Length=122890 Score = 605 bits (670), Expect = 5e-168 Identities = 734/993 (74%), Gaps = 10/993 (1%) Strand=Plus/Minus Query 211570 TTCTGCGACTGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTT 211629 |||||||||||||| || || | ||| | | || | || ||||| |||||| | Sbjct 54232 TTCTGCGACTGGGTTACCAGCACTGAAAACCGCCTTTACATCGGATGGTTCGGTGTTTTA 54173 Query 211630 ATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCACCT 211689 ||||| || ||| || ||||||| | ||||| | || ||||| ||||| ||| Sbjct 54172 ATGATTCCTACTCTATTAACTGCAACTTCTGTATTTATTATTGCTTTCATTGCAGCTCCT 54113 Query 211690 CCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACAAC 211749 || || ||||| || || |||||||| || || ||||||| | | || || |||||| Sbjct 54112 CCTGTAGATATTGATGGTATCCGTGAGCCTGTTTCTGGTTCTCTTCTTTACGGAAACAAC 54053 Query 211750 ATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTATC 211809 |||||||||| ||| | | || |||| || |||||||| |||||||| || || Sbjct 54052 ATCATCTCTGCTGCTATCATCCCTACTTCTGCAGCTATCGGTTTGCACTTCTACCCAATT 53993 Query 211810 TGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAATC 211869 |||||||| || | ||||||| ||||| ||||| |||||||||||| |||| |||| Sbjct 53992 TGGGAAGCTGCTTCCGTTGATGAATGGCTTTACAACGGTGGTCCTTACGAGTT---AATC 53936 Query 211870 -TTC--CACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATAC 211926 ||| |||||| | | || | | |||||||| | ||||||||||| ||| Sbjct 53935 GTTCTTCACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTAC 53876 Query 211927 CGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTC 211986 |||||||||||||||||||||||| |||||| |||||||| ||||| | || ||| Sbjct 53875 CGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACT 53816 Query 211987 GCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGT 212046 ||||| ||| | | |||||| | ||||| || ||||| ||||||||||||||||| Sbjct 53815 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGACGGTATGCCTTTAGGA 53756 Query 212047 ATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCAC 212106 || || || || |||||||||||| | || |||||||| ||||| ||||||||||||||| Sbjct 53755 ATCTCTGGTACTTTCAACTTCATGATTGTGTTCCAAGCTGAACACAACATCCTTATGCAC 53696 Query 212107 CCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCAC 212166 |||||||| ||| ||||| || ||| | |||||||| | ||||| ||||||||| Sbjct 53695 CCATTCCACATGCTTGGTGTAGCTGGTGTATTCGGTGGCTCTCTATTCAGTGCTATGCAT 53636 Query 212167 GGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTAT 212226 ||||| | || || || | ||||||||||| |||| || || ||| Sbjct 53635 GGTTCCTTAGTAACTTCAAGTTTAATCCGTGAAACTACTGAGAATGAGTCTGCTAACGCA 53576 Query 212227 GGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTC 212286 ||||||||||| || ||||| ||||| || || |||||||| ||||| || || ||||| Sbjct 53575 GGTTACAAGTTTGGTCAAGAGGAAGAAACTTACAACATCGTAGCTGCTCACGGTTACTTT 53516 Query 212287 GGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTC 212346 |||||| | || ||||| || || || |||||| | ||||||||||||| | Sbjct 53515 GGTAGATTAATTTTCCAATACGCTAGCTTTAACAACTCTCGTTCTTTACACTTCTTCTTA 53456 Query 212347 GCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTC 212406 || | |||||||| | || | ||||| || | | |||||| |||| ||||| ||| Sbjct 53455 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCATTAGGTATCAGCACTATGGCTTTC 53396 Query 212407 AACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCA-TC-AGGTAAGGTTGTTC 212464 ||| |||| || ||||||||||||||||| |||||||| || || |||| ||| || Sbjct 53395 AACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGA--CAGTCAAGGTCGTGTTATTA 53338 Query 212465 CTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAA 212524 ||||||| ||| | | ||| | || ||||||||||||||||||||||| ||| | | Sbjct 53337 ACACTTGGGCTGACATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 53278 Query 212525 ATGCACACAACTTCCCACTTGACTTAGCATCTG 212557 | || ||||||||||| || |||||||| |||| Sbjct 53277 ACGCTCACAACTTCCCTCTAGACTTAGCTTCTG 53245 >seq1820 Length=971917 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/230 (68%), Gaps = 12/230 (5%) Strand=Plus/Minus Query 193938 GCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACT 193997 ||| || ||| || |||||||| ||||| || ||| | ||||| |||| ||||| || Sbjct 565934 GCTTGTAATGGGATCCTCTTCAACCACGAGTCACCACGCAGAGGAGAGAACTTTGTCACC 565875 Query 193998 CGTAAGATTACACAAGG--TTTATC----TAAGATCTCTGTTGGATTACAGAAGATTCTT 194051 | || ||||| | || || || |||||| ||| | ||||||| || Sbjct 565874 AGAAAAATTACTCGAGCAATTGGTCGTATTAAGAT------TGGGCTCCAGAAGAAACTC 565821 Query 194052 TATCTTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCG 194111 | |||||||| || || || | |||||||| || ||||| ||||| | Sbjct 565820 TTCCTTGGTAACCTGAAGGCATCTCGTGATTGGGGCTTTGCTGGAGATTACGTTGAGGGT 565761 Query 194112 ATGTGGTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTAC 194161 |||||| | |||||||| ||||| | || ||||||||||| ||||||| Sbjct 565760 ATGTGGCTTATGTTGCAGCAGGAGAAGCCAGATGATTATGTCCTTGCTAC 565711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807535112064400