Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq1990 612 2e-170 >seq1990 Length=122890 Score = 612 bits (678), Expect = 2e-170 Identities = 738/998 (74%), Gaps = 12/998 (1%) Strand=Plus/Minus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 || || || ||||| || |||||| || ||| | ||| | || ||||| ||||| ||| Sbjct 54232 TTCTGCGACTGGGTTACCAGCACTGAAAACCGCCTTTACATCGGATGGTTCGGTGTTTTA 54173 Query 170726 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 170785 ||||| || ||| ||||||| || || || ||| | || ||||| || |||||| Sbjct 54172 ATGATTCCTACTCTATTAACTGCAACTTCTGTATTTATTATTGCTTTCATTGCAGCTCCT 54113 Query 170786 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACAA 170844 || || ||||| || || ||| | || || ||| | |||||| ||||| || || ||||| Sbjct 54112 CCTGTAGATATTGATGGTATCCGTGAGCCTGTTTCTGGTTCTCTTCTT-TACGGAAACAA 54054 Query 170845 CATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 170904 ||||||||||| |||| | | || |||| || || || || |||||||| || || Sbjct 54053 CATCATCTCTGCTGCTATCATCCCTACTTCTGCAGCTATCGGTTTGCACTTCTACCCAAT 53994 Query 170905 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTAT 170964 |||||||| || | | || || ||| | |||||||| ||||||||| ||||| | | Sbjct 53993 TTGGGAAGCTGCTTCCGTTGATGAATGGCTTTACAACGGTGGTCCTTACGAGTTAATCGT 53934 Query 170965 TTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAG 171024 | | |||||| | |||| | || |||||||||| | |||||||||| ||| | Sbjct 53933 TCTTCACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTACCG 53874 Query 171025 ACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGC 171084 |||| ||| | |||||||| ||| ||||| ||||| ||||| | || || ||| Sbjct 53873 TTTAGGTATGCGTCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACTGC 53814 Query 171085 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 171144 || ||| | | || ||| | ||||| || |||||||| |||||||| |||| || Sbjct 53813 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGACGGTATGCCTTTAGGAAT 53754 Query 171145 CTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCC 171204 ||| ||||| |||||||||||| | ||||||||||| ||||||||||| || |||||||| Sbjct 53753 CTCTGGTACTTTCAACTTCATGATTGTGTTCCAAGCTGAACACAACATCCTTATGCACCC 53694 Query 171205 CTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGG 171264 ||||| ||| |||||||| ||| | |||||||| ||| |||||||| ||||| || Sbjct 53693 ATTCCACATGCTTGGTGTAGCTGGTGTATTCGGTGGCTCTCTATTCAGTGCTATGCATGG 53634 Query 171265 TTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGG 171324 ||| |||| || || | ||||| | || || |||||||| ||| | ||| || Sbjct 53633 TTCCTTAGTAACTTCAAGTTTAATCCGTGAAACTACTGAGAATGAGTCTGCTAACGCAGG 53574 Query 171325 CTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGG 171384 || ||||| || ||||| |||||||| || ||||| || |||||||| || ||||| || Sbjct 53573 TTACAAGTTTGGTCAAGAGGAAGAAACTTACAACATCGTAGCTGCTCACGGTTACTTTGG 53514 Query 171385 TAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGC 171444 ||||||||| ||||| || || || |||||||||||||| |||||||||||| | || Sbjct 53513 TAGATTAATTTTCCAATACGCTAGCTTTAACAACTCTCGTTCTTTACACTTCTTCTTAGC 53454 Query 171445 TGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 171504 || | |||||||| || | ||||| || | | |||||| | || ||||| ||||| Sbjct 53453 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCATTAGGTATCAGCACTATGGCTTTCAA 53394 Query 171505 CCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTG---TACC 171561 | | ||||| ||||||||||||||||| ||||| || || | ||| | | || Sbjct 53393 CTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGA--CA---GTCAAGGTCGTGTTATT 53339 Query 171562 AACA--TGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGA 171619 |||| |||| || | | ||| | || |||||||| |||||||||||||||||| | Sbjct 53338 AACACTTGGGCTGACATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 53279 Query 171620 AATGCACACAACTTCCCACTAGACCTAGCATCTGCTGA 171657 || || ||||||||||| |||||| |||| |||| ||| Sbjct 53278 AACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 53241 Score = 408 bits (452), Expect = 5e-109 Identities = 706/1026 (69%), Gaps = 21/1026 (2%) Strand=Plus/Minus Query 171807 GATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTA 171866 ||||| ||| ||| ||||| ||||| ||||| | || ||||||||||| |||||||| Sbjct 44452 GATGACTGGCTAAGAAGAGACCGTTTTGTATTTGTAGGTTGGTCTGGTCTATTACTTTTT 44393 Query 171867 CCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGG 171926 || || ||||| | | | || || ||||| ||| || ||||| || || |||||| Sbjct 44392 CCGTGCGCTTATTTTTCTTTAGGTGGATGGTTTACAGGTACAACTTTTGTAACTTCATGG 44333 Query 171927 TACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTAACTGCAGCAGTA 171986 || || ||||| | || ||| ||| | || || || ||| ||||||| || || Sbjct 44332 TATACTCATGGATTGGCTAGCTCTTATTTAGAAGGTTGTAATTTTCTAACTGCTGCTGTT 44273 Query 171987 TCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGACCTGAGGCACAA 172046 || || |||| | || | | | ||| |||| | ||||||| || || |||||| Sbjct 44272 TCTACTCCTGCTAATAGTTTAGCACATTCGTTATTACTATTATGGGGTCCAGAAGCACAA 44213 Query 172047 GGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGCATTACATGGA 172106 |||||| | || |||| ||||||||| || ||||||| || || || | |||||| Sbjct 44212 GGAGATTTCACTCGTTGGTGTCAATTAGGAGGTCTATGGACTTTCGTTGCTCTTCATGGA 44153 Query 172107 GTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGACTTGTTGGGATA 172166 | |||| | ||||| || ||| | | || |||||| |||| || || || Sbjct 44152 GCTTTTGCTTTAATAGGCTTTATGTTGCGCCAATTTGAGCTTGCTAGATCCGTACAATTA 44093 Query 172167 CGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCACGAGCATCTTTCTA 172226 |||||||| |||||| | || || || | ||||| || || | ||| || Sbjct 44092 CGTCCTTATAACGCAATTGCTTTTTCTGGCCCAATTGCTGTTTTTGTTTCTGTATTTTTA 44033 Query 172227 ATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGTGTCGCAGCAATC 172286 || || ||| | ||||| ||||||| || |||||| |||||||| |||||||| Sbjct 44032 ATTTACCCACTTGGTCAATCAGGTTGGTTTTTTGCACCTAGTTTTGGTGTTGCAGCAATT 43973 Query 172287 TTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTTCATATG 172346 || || | ||||||||| | || |||||||| || ||| | || |||||||||||| Sbjct 43972 TTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTTCATATG 43913 Query 172347 ATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCAACAGTA 172406 ||||| || || || | | || | || | ||||||| || ||||||||||| ||| Sbjct 43912 ATGGGAGTTGCTGGAGTCTTGGGAGCTGCTCTTTTATGTGCTATTCATGGTGCAACTGTA 43853 Query 172407 CAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATTCAATCTACAACT 172466 | || || || | |||||| || | | | | ||| |||| Sbjct 43852 GAAAATACTTTATTTGAAGA---------------TG--GTGATGGTGCAA-ATACA--- 43814 Query 172467 TTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGATTACTGCTAACAGA 172526 ||| | || || | || || || |||||||||||| |||| |||| |||||| | Sbjct 43813 TTCCGTGCGTTTAACCCAACTCAATCTGAAGAAACTTATTCTATGGTTACAGCTAACCGT 43754 Query 172527 TTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACTTCCTTATG 172586 |||||||| || || || ||| | |||||||| |||||| | | || || ||| ||||| Sbjct 43753 TTCTGGTCTCAAATCTTCGGTGTTGCATTTTCTAACAAACGTTGGTTGCATTTCTTTATG 43694 Query 172587 TTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTTGCACTT 172646 | || ||||| || | ||| | |||| |||| || | || ||| | || | Sbjct 43693 CTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTATTGGAGTAGTTGGTTTAGCTTTA 43634 Query 172647 AACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTT 172706 || | |||| || || ||||| ||||| || || | ||||| |||||||| || ||| Sbjct 43633 AATTTACGAGCTTATGATTTTGTTTCTCAGGAAATTCGTGCAGCTGAAGACCCTGAATTT 43574 Query 172707 GAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCATCT 172766 ||||| || |||||||| || |||||||| ||||||||||| | || |||||| || || Sbjct 43573 GAAACTTTTTACACTAAAAATATTCTTCTAAATGAAGGTATTCGTGCTTGGATGGCAGCT 43514 Query 172767 GTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCAACGCA 172826 ||||| || ||||| || |||| |||||||| || || | ||||| || ||||| Sbjct 43513 CAAGATCAGCCTCATGAAAATCTTGTATTCCCAGAGGAGGTTCTACCACGTGGAAACGCT 43454 Query 172827 CTATAA 172832 || ||| Sbjct 43453 CTTTAA 43448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570254614563600