Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1886 179 5e-40 seq1794 127 3e-24 seq1948 107 2e-18 seq1774 102 1e-16 >seq1886 Length=1372085 Score = 179 bits (198), Expect = 5e-40 Identities = 261/362 (72%), Gaps = 10/362 (3%) Strand=Plus/Minus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| || ||||| |||||||||||||| ||||| |||| || ||||||||||||| Sbjct 694654 ACAGCAGGCATGCAAAATCGCAGTGCAGGCCCTCATCTCGTGAGATGAGTTCGTTGGAAA 694595 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA- 33414 |||| || || ||||| || || | ||| || |||||||| |||| || || ||| Sbjct 694594 ACGTAAGCCCTGGCATAAGACCTCTCTTCTTGAGCCAAAAGATGGC-GCAAAAACTCCCT 694536 Query 33415 GAAAAGAAGATTCCTTCTACTGCAG-CAAAGGCAATAAGTCTCTCTCCATAAC---CGGC 33470 |||||||| || || || || |||| | || || | | ||||||| || | | | || Sbjct 694535 GAAAAGAAAATCCCCTCGAC-GCAGGCGAAAGCCAGGATTCTCTCTGCAAAGCTCCCAGC 694477 Query 33471 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33530 ||||| ||||| ||| ||||||| || |||||| | || ||||| || || || Sbjct 694476 ACTGTCG---ATCCATTTTAGAGCCCAGTCAGCCTTCCTAGCAACGCAAGGTATGGTCTC 694420 Query 33531 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 33590 |||||||| || || | | || ||| |||||||| || | || | ||| | Sbjct 694419 AATGGCATTGAAAAGTCTGCTCTTCTCAGCTTGATCTTTAATGTACGCCTCCAACAACAA 694360 Query 33591 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33650 ||| |||||||| || |||||||| ||||| || ||||| ||||||||||| ||| || Sbjct 694359 ACTGTACATTTCTGAGTGAATGTTCTCAATAGCTATCTGGAATCCGTAGAACGCTCTGGC 694300 Query 33651 CT 33652 || Sbjct 694299 CT 694298 >seq1794 Length=856596 Score = 127 bits (140), Expect = 3e-24 Identities = 287/429 (67%), Gaps = 2/429 (0%) Strand=Plus/Minus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 || ||||| || ||||| || ||| ||| ||| |||| || || | | ||| Sbjct 303978 TCAAACTCTTCACCCCAGCAATCTGCCAGTCCTGGAGCCTCATTGGGGCAGAAAAGAGAC 303919 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 63256 || | || | || | ||| ||| |||| || || || |||||||| ||| | ||| || Sbjct 303918 CATACGCCATTCTCTTGCACACGTCTCATGAAAAGGTCTGGAATCCACAGACC-ATAGAA 303860 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316 |||||||| | |||| |||||| || || |||||| ||||||| || | | | Sbjct 303859 TAGATCTCGAGCCCTATTTTCCTCCTTCCCATGATTCTTCCTAAGATCCAGCCAATCGAA 303800 Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63376 ||||| | ||||||||| |||| || || || | | | || || ||| || || Sbjct 303799 TATATCGGCATGCCACGGCTCCAGATAGATAGCGAAAGCGCCCTTCCTCTTGCCGCCACC 303740 Query 63377 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63436 ||| || | ||| | ||| |||| ||| | || |||||||| || || || || || || Sbjct 303739 CTGGTCGACGTACCGAGCTGTGTCATTGAATACCCTCAACATCGGGATGATCCCATTAGA 303680 Query 63437 TATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 63496 | || || || || || ||||| ||| | ||||| |||||| || ||| | ||| Sbjct 303679 AGTCCCGTTTGTGCCACGAATGTAGCTGCCAGTAGCACGGATATTATGAACTGACAAACC 303620 Query 63497 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTC 63556 ||||| || || || || | || || || | ||||| ||||||||||| Sbjct 303619 AATTCCACCAGCTGACTTGCTAATAACAGCACACTCCTTCAGAGTGTCGTAGATACCCTC 303560 Query 63557 TATGCTATC 63565 ||||| || Sbjct 303559 AATGCTGTC 303551 >seq1948 Length=2296919 Score = 107 bits (118), Expect = 2e-18 Identities = 171/244 (70%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 33412 CCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CG 33468 || |||||||| || ||||| || || ||||| | || |||||| | | | | Sbjct 1731755 CCCGAAAAGAAAATCCCTTCGACACAGGCGAAGGCCAGAATTCTCTCCGCGAAGCTTCCA 1731814 Query 33469 GCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 33528 || |||| | ||||| || ||||||| || || ||||| | ||||| || || ||| Sbjct 1731815 GCACTGT---GGATCCATTTCAGAGCCCATTCTGCTTTCTTGGTGACACATGGTATGGTT 1731871 Query 33529 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 33588 || ||||| || ||||| ||||| || | |||||| | || | || | || Sbjct 1731872 TCAATGGCGTTGAAGAGCCGATTTTTCTCGGCATGATCTTTGATGTATGCCTCCAACAGT 1731931 Query 33589 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 33648 | ||| ||||| || || || |||||||| ||||| ||||||||||||||||| ||| Sbjct 1731932 AAACTGTACATCTCAGAGTGTATGTTTTCGATGGCAATCTGAAATCCGTAGAATGCTCTT 1731991 Query 33649 GCCT 33652 |||| Sbjct 1731992 GCCT 1731995 >seq1774 Length=893538 Score = 102 bits (112), Expect = 1e-16 Identities = 95/119 (80%), Gaps = 4/119 (3%) Strand=Plus/Plus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 |||||||||||||||||| |||||||| |||| ||| || |||||||| || || || Sbjct 738439 ACATGCGAAATCGCAGTGTAGACCCTCATCTCGTGAAATAAGCTCGTTGGAGAAAGTAAG 738498 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAA--TG--ATCCAGAA 33417 || ||||| ||||| | |||||| ||||| ||||||||| ||| || |||||||| Sbjct 738499 CCCTGGCATGAGGCCCCTCTTTTTCAGCCAGAATATGGAACAGAAACTGCAATCCAGAA 738557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622931704188400