Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_007022.1 Length=172963 Score E Sequences producing significant alignments: (Bits) Value seq380 131 2e-25 >seq380 Length=1266 Score = 131 bits (144), Expect = 2e-25 Identities = 199/278 (72%), Gaps = 9/278 (3%) Strand=Plus/Plus Query 6463 TTGAA-GAGCTTCACCGAA-GCAAATAGCCTTTGCCGCGATAACATGCATTAACGGACCA 6520 ||||| | ||||| || || |||| | || || || ||||| ||||||||||| |||||| Sbjct 30 TTGAANGCGCTTCTCCAAAAGCAACT-GCTTTCGCTGCGATTACATGCATTAATGGACCA 88 Query 6521 CCCTGAATACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTAGTA 6580 || ||||| || ||||| || | || | |||||| || | || || ||| | Sbjct 89 CCTTGAATTCCAGGGAAAATCGATTTATCGATTTTCTTCGCAAATTCC---TCTTTACAA 145 Query 6581 AGAATGAGACCACCACGAGGGCCGCGCAAAGTTTTATGAGTTGTAGAAGTAACAACGTCA 6640 ||||| | ||||||||||| || |||||||||||||| || || | ||||||| |||| Sbjct 146 AGAATCATTCCACCACGAGGTCCACGCAAAGTTTTATGTGTAGTTGTTGTAACAAAGTCA 205 Query 6641 GCACCCCATTTGAGTGGATTAGCATGAAGTTTTGATGCGACGAATCCAGCAAAGTGGGCC 6700 ||| | | ||||| ||| ||| || ||| || || ||||||| || ||| Sbjct 206 GCA---TAAGGAACAGGATTTTGATGTAGTCCTGCTGCAACTAAGCCAGCAATATGAGCC 262 Query 6701 ATATCGACCATCAACTTCGCGCCAGACATATCAGCAAT 6738 ||||| ||||| || | || ||| | ||||||||| Sbjct 263 ATATCCACCATTAAATAGGCTCCAACCTCATCAGCAAT 300 Score = 105 bits (116), Expect = 7e-18 Identities = 220/320 (69%), Gaps = 6/320 (2%) Strand=Plus/Plus Query 6926 CCATGTGTTAAATGACCACCGCAATCCAAAGACATCGCCAATACTGAATCGCCTGGACTC 6985 |||||||||||||||||||| | ||| |||| | ||||| | ||| || | ||| Sbjct 479 CCATGTGTTAAATGACCACCATGAGACAAGTTCATCCCTAATACGGTATCACCATG-CTC 537 Query 6986 -AGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGC 7044 || | | | ||||| || ||||| |||| ||| ||||| || || |||||| | Sbjct 538 TAGAATAGTAAAATAAACCGCCATATTTGCTTGTGCACCTGAATGCGGCTGTACGTTTAC 597 Query 7045 GAAAT-TGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATCTCATCGG 7103 | |||| | || | |||||| || || || || | | || | ||| Sbjct 598 ATGCTCTGCACCGAAG-ATTTCTTTCGCGCGGTCGCGAGCAATATCTTCCACAATATCTA 656 Query 7104 CTTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGTAA 7163 | | | |||| ||||||||||| ||||| | ||||| ||||| ||||| || ||||| | Sbjct 657 CATATTCACATCCGCCGTAATAACGTTTAGCAGGATAACCCTCTGCATATTTATTGGTCA 716 Query 7164 AAATAGAACCTTGCGCTTTCATAACATCATCGGACACATAGTTTTCGGATGCAATCAA-G 7222 | | ||| |||||||||| ||| || | || ||| ||||||| || |||||||| Sbjct 717 ATACAGATCCTTGCGCTTCCATTACCGCTTCACTTACAAAGTTTTCTGACGCAATCAATT 776 Query 7223 CAAACTTCACAACTTTGGCG 7242 ||| ||| | |||||||| Sbjct 777 CAATTTTCGC-TCTTTGGCG 795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553339835329200