Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1794 154 4e-32 seq1925 118 3e-21 >seq1794 Length=856596 Score = 154 bits (170), Expect = 4e-32 Identities = 292/425 (69%), Gaps = 16/425 (4%) Strand=Plus/Plus Query 363636 CATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGG 363695 ||| |||||||||| ||||| || ||| | |||||| ||||| |||| || || || Sbjct 303556 CATTGAGGGTATCTACGACACTCTGAAGGAGTGTGCTGTTATTAGCAAGTCAGCTGGTGG 303615 Query 363696 AATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGCACAGGGG 363754 ||||||| | || | || ||| | ||||| || | ||| |||||||| |||||| | Sbjct 303616 AATTGGTTTGTCAGTTCATAATATCCGTGCTACTGG-CAGCTACATTCGTGGCACAAACG 303674 Query 363755 GATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCG 363814 | || |||||| | | || ||| | | || || | | || || ||||||||| Sbjct 303675 GGACTTCTAATGGGATCATCCCGATGTTGAGGGTATTCAATGACACAGCTCGGTACGTCG 303734 Query 363815 ACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCG 363874 |||||||||| || ||| | || || || || ||||| ||||| ||||| ||||||| Sbjct 303735 ACCAGGGTGGCGGCAAGAGGAAGGGCGCTTTCGCTATCTATCTGGAGCCGTGGCATGCCG 303794 Query 363875 ATATTTTTGAGTTTCTTGAGCTCCGGAA-AAACACGGGAAAAGAGGAATTGCGTGCACGT 363933 |||| || || | || || || |||| || || ||| || |||||| | || || Sbjct 303795 ATATATTCGATTGGCTGGATCTTAGGAAGAATCATGGG-AAGGAGGAAAATAGGGCTCGA 303853 Query 363934 GATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAG 363993 ||||| ||||||| || ||| || | |||| ||| |||| || ||| | | || Sbjct 303854 GATCTATTCTATGGTCTGTGGATTCCAGACCTTTTCATGAGACGTGTGCAAG------AG 303907 Query 363994 AAT------TGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGT 364047 ||| ||||| || || ||||| | || |||||| || | ||| |||||| Sbjct 303908 AATGGCGTATGGTCTCTTTTCTGCCCCAATGAGGCTCCAGGACTGGCAGATTGCTGGGGT 303967 Query 364048 GACGA 364052 || || Sbjct 303968 GAAGA 303972 >seq1925 Length=1847415 Score = 118 bits (130), Expect = 3e-21 Identities = 237/346 (68%), Gaps = 4/346 (1%) Strand=Plus/Minus Query 363637 ATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGA 363696 || ||||| || | || || || ||| | |||||| | ||| |||| || || || Sbjct 481694 ATTGAGGGGATTTACGATACCCTGAAGGAGTGTGCTGTAATTAGCAAGTCGGCCGGTGGC 481635 Query 363697 ATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGCACAGGGGG 363755 ||||| | || |||| || | || | |||| ||| ||||| || ||||| || Sbjct 481634 ATTGGCCTGTCTGTCCATAACATCCGCACGACAGG-CAGCTACATCCGGGGCACCAATGG 481576 Query 363756 ATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGA 363815 | || ||||| | | |||||||| | |||||| | | ||||| |||| || || Sbjct 481575 AACTTCCAATGGTATAATCCCCATGCTGAGGGTGTTTAATGACACTGCCCGGTATGTTGA 481516 Query 363816 CCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGA 363875 ||||||||| || ||| | || || |||||||| || || || || || ||||| || Sbjct 481515 CCAGGGTGGCGGTAAGAGGAAGGGTGCGTTTGCAATTTACCTTGAACCCTGGCATGCAGA 481456 Query 363876 TATTTTTGAGTTTCTTGAGCTCCGGAA-AAACACGGGAAAAGAGGAATTGCGTGCACGTG 363934 ||| || || | | || || || || || |||||| || |||||| | || || | Sbjct 481455 TATCTTCGAATGGTTGGACCTTCGAAAGAACCACGGG-AAGGAGGAAAGTAGAGCTCGGG 481397 Query 363935 ATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGT 363980 || ||||||||| ||||||| | | |||| ||| ||| | || || Sbjct 481396 ATTTGTTCTATGGACTTTGGATCCCCGACCTTTTCATGCAACGTGT 481351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303320368556180