Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1917 104 2e-17 seq1889 102 7e-17 seq1943 93.3 4e-14 seq1705 91.5 1e-13 seq1901 89.7 4e-13 seq1762 86.0 5e-12 >seq1917 Length=1730829 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || || || || | || ||| | || || ||| | Sbjct 507902 ATGCAAATCTTTGTGAAGACGTTGACGGGGAAGACTATCACCTTGGAGGTGGAGAGCTCT 507961 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || || |||||| ||||| |||||||| ||||||||||| Sbjct 507962 GACACGATTGACAACGTTAAGACGAAGATTCAAGACAAGGAAGGCATTCCTCCCGATCAG 508021 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || || |||| || |||||| ||| | || |||| | | | | || || ||| Sbjct 508022 CAAAGGCTTATTTTCGCCGGCAAACAATTGGAGGATGGTCGCACCTTGGCAGACTACAAC 508081 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||||||||| || | |||||||| || ||||| |||| || Sbjct 508082 ATCCAAAAAGAATCAACCTTGCATTTAGTCCTACGATTGCGAGGTGG 508128 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || || || || | || ||| | || || ||| | Sbjct 507674 ATGCAAATCTTTGTGAAGACTTTGACAGGGAAGACAATCACCTTGGAGGTGGAGAGCTCT 507733 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || || ||||| || || ||||| |||||||||||||| Sbjct 507734 GATACGATTGATAACGTGAAGACGAAGATCCAGGATAAGGAAGGAATACCTCCCGATCAG 507793 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA-TGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | || |||||||||||||| || ||| | | | | |||||||| Sbjct 507794 CAGCGGCTCATATTCGCGGGCAAGCAACTCGAGGACGGACGCACTCTTGCG-GATTATAA 507852 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| || || ||||| || | || |||||||| || ||||||| || Sbjct 507853 CATACAGAAGGAATCCACTTTGCACTTAGTGTTGCGACTGAGAGGTGG 507900 >seq1889 Length=1415477 Score = 102 bits (112), Expect = 7e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || ||||| || | | ||| | || || ||| | | Sbjct 1325516 ATGCAGATCTTTGTGAAGACCTTGACTGGGAAGACTACCACCCTTGAGGTGGAGAGCTCC 1325575 Query 24051 GACACCATCGAGCAAGTCAA-ACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || || || || ||| ||| ||||| ||||| |||||||| || || Sbjct 1325576 GACACGATTGAAGCCGTGAAGACCAAA-ATTCAGGACAAGGAAGGTATACCTCCTGACCA 1325634 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 ||||| |||| | || ||||||||| | || || | |||| || || ||||||| Sbjct 1325635 GCAGAGGTTGATCTTCGCCGGCAAGCAGTTGGAGGACGGTAGAA-CGCTTGCTGATTATA 1325693 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||| || || |||||| | || | ||||| || ||||||||||| Sbjct 1325694 ACATTCAGAAGGAGTCTACACTGCACCTTGTGTTGAGGTTGAGAGGAGG 1325742 >seq1943 Length=2190071 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || || || || | || || | ||||| || Sbjct 1470072 ATGCAAATATTTGTTAAGACGTTGACGGGGAAGACTATCACATTAGAAGTGGAAAGTTCT 1470131 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || |||||| ||||||||||| || || || ||||| Sbjct 1470132 GACACCATCGACAACGTGAAGACTAAGATTCAGGACAAAGAAGGAATTCCCCCGGATCAG 1470191 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 |||||||| || | | |||||||||||| ||||||| | || | || ||||| || Sbjct 1470192 CAGAGACTTATCTTTGCCGGCAAGCAACTGGAAGATGGTCG-TACTTTGGCTGATTACAA 1470250 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||| || || || || | || || || | | ||||||||||| Sbjct 1470251 CATTCAGAAGGAGTCCACCCTGCACTTGGTCCTGCGCTTGAGAGGAGG 1470298 >seq1705 Length=561313 Score = 91.5 bits (100), Expect = 1e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 24036 GAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGC 24095 || |||||| || || || ||||| | || ||| ||| ||| ||||| || ||| Sbjct 93341 GAGGTCGAGTCCTCTGATACTATCGACAATGTGAAAACAAAAATTCAGGACAAGGAGGGC 93282 Query 24096 ATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC 24155 || ||||||||||||||| | ||||||| || ||||||||| |||||||||| | | | Sbjct 93281 ATTCCTCCCGATCAACAGCGTCTGATTTTCGCCGGCAAGCAGCTCGAAGATGGTCGCACC 93222 Query 24156 GTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 | || || ||||| || || || ||||| | || || ||| Sbjct 93221 CTGGCTGACTACAACATCCAGAAGGAGTCTACGTTGCACTTGGTG 93177 >seq1901 Length=1553398 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| || ||||| || | || ||| | || || ||| | | Sbjct 1018801 ATGCAGATCTTTGTGAAAACGTTGACTGGCAAGACCATCACCCTTGAGGTTGAGAGCTCC 1018860 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || || |||||| ||||| |||||||| ||||| || || Sbjct 1018861 GATACAATTGACAATGTGAAGACGAAGATTCAGGACAAGGAAGGCATTCCTCCAGACCAG 1018920 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| |||| | | ||||||||||| || || | ||| | | ||| || || | Sbjct 1018921 CAGAGGTTGATCTTTGCAGGCAAGCAACTGGAGGACGGACGAACCCT-AGCGGACTACAG 1018979 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| || ||||| || || |||| ||||| | || ||||| ||||| Sbjct 1018980 CATCCAGAAAGAGTCCACTCTTCACTTAGTCCTTAGGTTGAGGGGAGG 1019027 >seq1762 Length=742324 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || || || || | || || | || |||||| | Sbjct 519199 ATGCAAATCTTTGTGAAGACGTTGACGGGCAAGACAATCACGTTGGAGGTCGAGAGCTCG 519258 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | || || ||||||| ||||| ||||| || ||||||||||| Sbjct 519259 GATACAATCGACAACGTGAAGACAAAGATTCAAGACAAGGAAGGTATTCCTCCCGATCAG 519318 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| || |||| | || || ||||| | || |||| ||| || ||||| || Sbjct 519319 CAGCGATTGATCTTCGCTGGGAAGCAGTTGGAGGATGGGCGAACTCTCGCGGATTACAAT 519378 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || || ||||| | || | ||||| | |||||||||| Sbjct 519379 ATTCAGAAGGAGTCTACCTTGCACCTTGTGTTGCGGCTGAGAGGAGG 519425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429925572708450