Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq1917 98.7 8e-16 seq1814 96.9 3e-15 seq1943 87.8 2e-12 >seq1917 Length=1730829 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| || ||| | ||||| || || || ||| | || |||| | Sbjct 507902 ATGCAAATCTTTGTGAAGACGTTGACGGGGAAGACTATCACCTTGGAGGTGGAGAGCTCT 507961 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || || || ||| || || |||||| | || ||||| Sbjct 507962 GACACGATTG-ACAACGTTAAGACGAAGATTCAAGACAAGGAAGGCATTCCTCCCGATCA 508020 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| ||||||| || ||||||||||| || |||| ||| |||| || || || Sbjct 508021 GCAAAGGCTTATTTTCGCCGGCAAACAATTGGAGGATGGTCGCACCTTGGCAGACTACAA 508080 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||| |||||||| || || | ||| | || | |||||||||| || Sbjct 508081 CATCCAAAAAGAATCAACCTTGCATTTAGTCCTACGATTGCGAGGTGG 508128 >seq1814 Length=924488 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || || || || || |||||||| || |||||| |||| ||| | Sbjct 462864 ATGCAGATCTTCGTGAAGACCCTGACGGGAAAGACGATTACCCTCGAGGTCGAGAGCTCA 462923 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || || ||| ||| || || || ||| |||| || || Sbjct 462924 GACACAATTG-ACAACGTGAAGACAAAGATTCAGGACAAGGAGGGCATCCCACCCGACCA 462982 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || || |||| ||| || || || || || |||| ||| | ||||| || || Sbjct 462983 GCAGAGGCTGATTTTTGCTGGGAAGCAGTTGGAGGATGGGCGCACCCTTGCCGACTACAA 463042 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||| |||||||||||||| | || ||||| | || ||||| ||||||| Sbjct 463043 CATCCAAAAAGAGTCTACCTTGCACTTGGTGCTTAGGTTGCGGGGAGGAA 463092 >seq1943 Length=2190071 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| || ||||||||||| ||||| || || ||||| | ||| ||| | Sbjct 1469844 ATGCAAATATTCGTCAAAACGCTGACGGGGAAGACGATTACGTTGGAAGTTGAGAGCTCA 1469903 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || ||| ||| | || || || ||| || |||||||| | || ||| ||| Sbjct 1469904 GATACTATTGATAACGTTAAGACGAAGATTCAAGACAAAGAAGGTATTCCACCTGACCAG 1469963 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| || | |||| ||| || || || || || |||| || |||||||||| ||| Sbjct 1469964 CAACGATTGATTTTTGCCGGAAAGCAGTTGGAGGATGGGCGTACTCTGGCCGATTACAAC 1470023 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 ||||| || ||||| || | || |||||||| Sbjct 1470024 ATTCAGAAGGAGTCCACGCTTCACCTGGTGTTG 1470056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425333684078800