Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1886 176 6e-39 seq1948 104 3e-17 seq1774 98.7 1e-15 seq1925 89.7 7e-13 >seq1886 Length=1372085 Score = 176 bits (194), Expect = 6e-39 Identities = 258/361 (71%), Gaps = 8/361 (2%) Strand=Plus/Minus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| || ||||| ||||||||||| || ||||| |||| || | ||||||||||| Sbjct 694654 ACAGCAGGCATGCAAAATCGCAGTGCAGGCCCTCATCTCGTGAGATGAGTTCGTTGGAAA 694595 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA- 32771 |||| || || ||||| || || | ||| || |||||||| |||| |||||| ||| Sbjct 694594 ACGTAAGCCCTGGCATAAGACCTCTCTTCTTGAGCCAAAAGATGG-CGCAAAAACTCCCT 694536 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCG 32828 ||||||||||| || || || || || || | | ||||||| || | | | || Sbjct 694535 GAAAAGAAAATCCCCTCGACGCAGGCGAAAGCCAGGATTCTCTCTGCAAAGCTCCCAGCA 694476 Query 32829 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888 ||||| ||||| ||| ||||||| || |||||| | || ||||| || ||||| Sbjct 694475 CTGTCG---ATCCATTTTAGAGCCCAGTCAGCCTTCCTAGCAACGCAAGGTATGGTCTCA 694419 Query 32889 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 32948 || ||||| || || | | || ||| |||||||| || | || | ||| | | Sbjct 694418 ATGGCATTGAAAAGTCTGCTCTTCTCAGCTTGATCTTTAATGTACGCCTCCAACAACAAA 694359 Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008 || |||||||| || |||||||| ||||| || || || ||||||||||| ||| ||| Sbjct 694358 CTGTACATTTCTGAGTGAATGTTCTCAATAGCTATCTGGAATCCGTAGAACGCTCTGGCC 694299 Query 33009 T 33009 | Sbjct 694298 T 694298 >seq1948 Length=2296919 Score = 104 bits (114), Expect = 3e-17 Identities = 170/244 (70%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 32769 CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CG 32825 || ||||||||||| ||||| || || ||||| | || |||||| | | | | Sbjct 1731755 CCCGAAAAGAAAATCCCTTCGACACAGGCGAAGGCCAGAATTCTCTCCGCGAAGCTTCCA 1731814 Query 32826 GCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 32885 || |||| | ||||| || ||||||| || || ||||| | ||||| || || || Sbjct 1731815 GCACTGT---GGATCCATTTCAGAGCCCATTCTGCTTTCTTGGTGACACATGGTATGGTT 1731871 Query 32886 TCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA 32945 || || || || ||||| ||||| || | |||||| | |||| || | || Sbjct 1731872 TCAATGGCGTTGAAGAGCCGATTTTTCTCGGCATGATCTTTGATGTATGCCTCCAACAGT 1731931 Query 32946 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTA 33005 | ||| ||||| || || || |||||||| ||||| || |||||||||||||| ||| Sbjct 1731932 AAACTGTACATCTCAGAGTGTATGTTTTCGATGGCAATCTGAAATCCGTAGAATGCTCTT 1731991 Query 33006 GCCT 33009 |||| Sbjct 1731992 GCCT 1731995 >seq1774 Length=893538 Score = 98.7 bits (108), Expect = 1e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719 ||||||||||||||||||||||||||| |||| ||| | |||||||| || || || Sbjct 738439 ACATGCGAAATCGCAGTGTAGACCCTCATCTCGTGAAATAAGCTCGTTGGAGAAAGTAAG 738498 Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGA 32758 || ||||| ||||| | |||||| ||||| |||||||| Sbjct 738499 CCCTGGCATGAGGCCCCTCTTTTTCAGCCAGAATATGGA 738537 >seq1925 Length=1847415 Score = 89.7 bits (98), Expect = 7e-13 Identities = 295/456 (65%), Gaps = 2/456 (0%) Strand=Plus/Plus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 ||||| | || |||||| || | ||||| || ||||| || || | || ||| Sbjct 481273 TCGAATTGTTCACCCCAACAATCCGCGAGTCCTGGCGCTTCATTGGGGCAGAACAGAGAC 481332 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 63111 || || | || | || |||| ||| || || || || |||||||| | ||| || Sbjct 481333 CATGTGCCATTATTTTGGACACGTTGCATGAAAAGGTCGGGGATCCAAAGTCC-ATAGAA 481391 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 | ||| | | |||| |||||| || || |||||| ||| || | | | | Sbjct 481392 CAAATCCCGAGCTCTACTTTCCTCCTTCCCGTGGTTCTTTCGAAGGTCCAACCATTCGAA 481451 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 ||||| | |||||| ||||| | ||| || || | | || || || || || Sbjct 481452 GATATCTGCATGCCAGGGTTCAAGGTAAATTGCAAACGCACCCTTCCTCTTACCGCCACC 481511 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 ||| || | || | || |||| |||| | || |||| ||| || || ||||||||||| Sbjct 481512 CTGGTCAACATACCGGGCAGTGTCATTAAACACCCTCAGCATGGGGATTATACCATTGGA 481571 Query 63292 TGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 63351 || |||||||| || ||| ||||| || | | || || ||| | || || || Sbjct 481572 AGTTCCATTGGTGCCCCGGATGTAGCTGCCTGTCGTGCGGATGTTATGGACAGACAGGCC 481631 Query 63352 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 63411 || || || ||| || |||| || || || | ||||| || || ||||| Sbjct 481632 AATGCCACCGGCCGACTTGCTAATTACAGCACACTCCTTCAGGGTATCGTAAATCCCCTC 481691 Query 63412 TATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 ||||| |||| ||||| ||||| |||||||| Sbjct 481692 AATACTGTCATTTTTCATGCACAGTAGGAAACAGCT 481727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633616238404000