Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq1990 702 0.0 >seq1990 Length=122890 Score = 702 bits (778), Expect = 0.0 Identities = 756/996 (76%), Gaps = 6/996 (1%) Strand=Plus/Minus Query 166053 CTTCTGCGAATGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACT 166112 ||||||||| ||||||||| || | ||||| ||||| | || ||||| || | Sbjct 54233 CTTCTGCGACTGGGTTACCAGCACTGAAAACCGCCTTTACATCGGATGGTTCGGTGTTTT 54174 Query 166113 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCTTTCGTAGCGGCAC 166171 |||||||| ||||| || | ||||| ||||| || || | |||||| | || || | Sbjct 54173 AATGATTCCTACTCTATTAACTGCAACT-TCTGTATTTATTATTGCTTTCATTGCAGCTC 54115 Query 166172 CTCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACA 166231 ||||||| ||||| ||||| ||||||||||| || | || ||||| | || || |||| Sbjct 54114 CTCCTGTAGATATTGATGGTATCCGTGAGCCTGTTTCTGGTTCTCTTCTTTACGGAAACA 54055 Query 166232 ACATCATCTCTGGTGCTGTTGTCCC--CTCCTCCAACGCAATTGGTCTTCACTTCTATCC 166289 |||||||||||| |||| | |||| || || || || || ||| | |||||||| || Sbjct 54054 ACATCATCTCTGCTGCTATCATCCCTACTTCTGCA--GCTATCGGTTTGCACTTCTACCC 53997 Query 166290 CATCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGT 166349 || |||||||| || || |||||||||||||||| ||||||||||||| | || | | Sbjct 53996 AATTTGGGAAGCTGCTTCCGTTGATGAATGGCTTTACAACGGTGGTCCTTACGAGTTAAT 53937 Query 166350 AGTCTTCCACTTCCTCATCGGCATCTATGCCTACATGGGTCGTGAATGGGAATTGTCTTA 166409 || | |||||| | | || | | ||||||||||||||| |||||| | || Sbjct 53936 CGTTCTTCACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTA 53877 Query 166410 CCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATC 166469 ||| | ||||||||||||||||| || ||||| || || |||||||| || || | Sbjct 53876 CCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTAC 53817 Query 166470 CGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGG 166529 || || ||| || |||| || | |||||||| |||||||||| ||||| | || Sbjct 53816 TGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGACGGTATGCCTTTAGG 53757 Query 166530 TATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCA 166589 ||| ||| || ||||||| |||| |||| |||||||| || ||||||||||| ||||| Sbjct 53756 AATCTCTGGTACTTTCAACTTCATGATTGTGTTCCAAGCTGAACACAACATCCTTATGCA 53697 Query 166590 CCCCTTCCATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCA 166649 ||| ||||| ||||| |||||||| |||||||||||||| || || ||| || ||||| Sbjct 53696 CCCATTCCACATGCTTGGTGTAGCTGGTGTATTCGGTGGCTCTCTATTCAGTGCTATGCA 53637 Query 166650 CGGCAGTCTCGTTACTTCCTCGCTCGTCCGTGAGACCACTGAAACTGAGTCTCAAAACTA 166709 || | || ||||| | ||||||| || ||||| | ||||||| ||| Sbjct 53636 TGGTTCCTTAGTAACTTCAAGTTTAATCCGTGAAACTACTGAGAATGAGTCTGCTAACGC 53577 Query 166710 TGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACTT 166769 |||||||||||||||||||| ||||| || ||||||||||| |||||||| |||||||| Sbjct 53576 AGGTTACAAGTTTGGTCAAGAGGAAGAAACTTACAACATCGTAGCTGCTCACGGTTACTT 53517 Query 166770 CGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTTCCT 166829 ||| | | || |||||||||||| ||| ||||||||||| || | ||||||||| | Sbjct 53516 TGGTAGATTAATTTTCCAATACGCTAGCTTTAACAACTCTCGTTCTTTACACTTCTTCTT 53457 Query 166830 CGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGCACCATGGCATT 166889 || || |||||||| || ||||||||||| ||||| | ||| | ||||| ||||| || Sbjct 53456 AGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCATTAGGTATCAGCACTATGGCTTT 53397 Query 166890 CAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAA 166949 |||| | |||||||||||||||||||| || | | || |||| |||||||| | || Sbjct 53396 CAACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGACAGTCAAGGTCGTGTTATTAA 53337 Query 166950 CACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAA 167009 ||||||||| || || ||||||||||| || ||||||||||| ||||| || ||||| Sbjct 53336 CACTTGGGCTGACATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 53277 Query 167010 TGCTCACAACTTCCCTCTGGATCTTGCTGCTGCTGA 167045 ||||||||||||||||| || | ||| ||| ||| Sbjct 53276 CGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 53241 Score = 598 bits (662), Expect = 5e-166 Identities = 737/1006 (73%), Gaps = 6/1006 (1%) Strand=Plus/Minus Query 167310 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 167369 ||||||||||||| | | | ||||| ||||| ||||| || |||||||| || | |||| Sbjct 44454 TGGATGACTGGCTAAGAAGAGACCGTTTTGTATTTGTAGGTTGGTCTGGTCTATTACTTT 44395 Query 167370 TTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTTGTTACGAGCT 167429 |||| |||||| | | | ||||| ||| |||| || || || ||||| || | Sbjct 44394 TTCCGTGCGCTTATTTTTCTTTAGGTGGATGGTTTACAGGTACAACTTTTGTAACTTCAT 44335 Query 167430 GGTATACCCACGGGTTGGCGTCTAG---TTACCTTGAGGGTGCTAATTTTCTCACGGCAG 167486 ||||||| || || ||||| ||| ||| | || ||| ||||||||| || || | Sbjct 44334 GGTATACTCATGGATTGGC---TAGCTCTTATTTAGAAGGTTGTAATTTTCTAACTGCTG 44278 Query 167487 CAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGT 167546 | || || ||||||||| | | | | ||||| | | ||| | |||||||| || Sbjct 44277 CTGTTTCTACTCCTGCTAATAGTTTAGCACATTCGTTATTACTATTATGGGGTCCAGAAG 44218 Query 167547 CTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCC 167606 | || || ||||||| | ||||| || | || || || ||| |||| || || || | Sbjct 44217 CACAAGGAGATTTCACTCGTTGGTGTCAATTAGGAGGTCTATGGACTTTCGTTGCTCTTC 44158 Query 167607 ACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAGTAGACTAGTAG 167666 | ||||| |||||| | ||||| |||||| | || ||||||||| | |||| ||| Sbjct 44157 ATGGAGCTTTTGCTTTAATAGGCTTTATGTTGCGCCAATTTGAGCTTGCTAGATCCGTAC 44098 Query 167667 GTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTT 167726 | |||||||| || || |||||||||||||| || |||||||| ||||| ||||| | Sbjct 44097 AATTACGTCCTTATAACGCAATTGCTTTTTCTGGCCCAATTGCTGTTTTTGTTTCTGTAT 44038 Query 167727 TTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAG 167786 || | || || || || || || || ||||||| |||||||| ||||||||||||| Sbjct 44037 TTTTAATTTACCCACTTGGTCAATCAGGTTGGTTTTTTGCACCTAGTTTTGGTGTTGCAG 43978 Query 167787 CGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTCC 167846 | || || ||||| | ||||| | || ||||||||||||||||| | ||||| || | Sbjct 43977 CAATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTTC 43918 Query 167847 ATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCATGGTGTTA 167906 ||||||||||||||||||| || | || | ||| | | | ||| || ||||||| | Sbjct 43917 ATATGATGGGAGTTGCTGGAGTCTTGGGAGCTGCTCTTTTATGTGCTATTCATGGTGCAA 43858 Query 167907 CAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAAAGCATTTGATA 167966 | ||||| |||||| | | |||||||||||| ||||| || ||| || ||| | Sbjct 43857 CTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACC 43798 Query 167967 CGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTT 168026 | ||||| || ||||||||||| ||||| || |||||||| |||||||||||||| | Sbjct 43797 CAACTCAATCTGAAGAAACTTATTCTATGGTTACAGCTAACCGTTTCTGGTCTCAAATCT 43738 Query 168027 TTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCA 168086 | ||| |||| || || || ||||||||||| ||||||||||| || || || || | Sbjct 43737 TCGGTGTTGCATTTTCTAACAAACGTTGGTTGCATTTCTTTATGCTATTTGTACCAGTAA 43678 Query 168087 TGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTTCGTGCTTATG 168146 || | |||| ||| ||||||| | | ||| | || | ||| | || ||||||| Sbjct 43677 CTGGTTTATGGATGAGTGCTATTGGAGTAGTTGGTTTAGCTTTAAATTTACGAGCTTATG 43618 Query 168147 ACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTTCTATACGA 168206 | ||||| ||||||||| || | ||||| || || || || ||||||||||| || || | Sbjct 43617 ATTTTGTTTCTCAGGAAATTCGTGCAGCTGAAGACCCTGAATTTGAAACTTTTTACACTA 43558 Query 168207 AAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAACCACATG 168266 |||| || || || |||||||| | ||||| |||||||| | ||| || || |||| Sbjct 43557 AAAATATTCTTCTAAATGAAGGTATTCGTGCTTGGATGGCAGCTCAAGATCAGCCTCATG 43498 Query 168267 AAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 |||| ||||||||||||| || || | ||| | || |||||||| Sbjct 43497 AAAATCTTGTATTCCCAGAGGAGGTTCTACCACGTGGAAACGCTCT 43452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567217890104000