Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1886 96.9 4e-15 seq1977 91.5 2e-13 seq1689 87.8 2e-12 seq1672 87.8 2e-12 seq1491 86.0 7e-12 seq1459 84.2 2e-11 >seq1886 Length=1372085 Score = 96.9 bits (106), Expect = 4e-15 Identities = 237/357 (66%), Gaps = 13/357 (4%) Strand=Plus/Minus Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGC 93140 |||||| | ||| ||||| ||| || | || || |||||||| || | || ||| Sbjct 694657 TGTACAGCAGGCATGCAAAATCGCAGTGCAGGCCCTCATCTCGTGAGATGAGTTCGTTGG 694598 Query 93141 TGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTAC 93200 || || | ||||| | || |||| |||||||||||||| || | |||||| | Sbjct 694597 AAAACGTAAGCCCTGGCATAAGACCTCTCTTCTTGAGCCAAAAGATGGCGCAAAAACTCC 694538 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260 | ||||| || || || || ||| || || |||| || | || ||||| | | Sbjct 694537 CTGAAAAGAAAATCCCCTCGACGCAGGCGAAAGCCAGGATTCTCTCTGCAAAGCTCCC-- 694480 Query 93261 AATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320 | |||| ||||||||||| |||||| || || || | || ||||||| || | Sbjct 694479 -AGCACTGTCGATCCATTTTAGAGCCCAGTCAGCCTTCCTAGCAACGCAAGGTATGGTCT 694421 Query 93321 CGATAGCGTTAAATAGGTAATCTCGCTCGTCCGA-----ATCTCGTATGTATGTATCGAT 93375 | || || || || || ||| |||| || | |||| ||||| | || | Sbjct 694420 CAATGGCATTGAAAAG----TCT-GCTCTTCTCAGCTTGATCTTTAATGTACGCCTCCAA 694366 Query 93376 TAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAA 93432 |||| | |||||||| || || | ||||| || || || |||||||||||||| Sbjct 694365 CAACAAACTGTACATTTCTGAGTGAATGTTCTCAATAGCTATCTGGAATCCGTAGAA 694309 >seq1977 Length=3006955 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/91 (84%), Gaps = 3/91 (3%) Strand=Plus/Plus Query 126262 TACA-GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGG 126318 |||| ||||| ||||||||||||||||||||||||| | ||| ||||| ||| || Sbjct 1272208 TACATGTCAGCATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGG 1272267 Query 126319 GAGCGTGGGTTCGAACCCCACACCTGACAAA 126349 | ||||||||||||||||||| |||||||| Sbjct 1272268 GGGCGTGGGTTCGAACCCCACTGCTGACAAA 1272298 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/91 (84%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 126262 TACA-GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGG 126318 |||| ||||| ||||||||||||||||||||||||| | ||| ||||| ||| || Sbjct 1273353 TACATGTCAGCATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGG 1273294 Query 126319 GAGCGTGGGTTCGAACCCCACACCTGACAAA 126349 | ||||||||||||||||||| |||||||| Sbjct 1273293 GGGCGTGGGTTCGAACCCCACTGCTGACAAA 1273263 >seq1689 Length=541835 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| ||| || Sbjct 6563 AGTCAGCATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGGGGGC 6504 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||| |||||| Sbjct 6503 GTGGGTTCGAACCCCACTGCTGACA 6479 >seq1672 Length=497188 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| ||| || Sbjct 226035 AGTCAGCATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGGGGGC 225976 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||| |||||| Sbjct 225975 GTGGGTTCGAACCCCACTGCTGACA 225951 >seq1491 Length=110927 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 ||||| ||||||||||||||||||||||||| | ||| ||||| ||| ||| ||| Sbjct 88657 GTCAGCATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGGAAGGGGGCG 88598 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||| |||||| Sbjct 88597 TGGGTTCGAACCCCACTGCTGACA 88574 >seq1459 Length=58456 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 |||||| ||||||||||||| ||||||||||| | ||| ||||| ||| ||| || Sbjct 13092 AGTCAGCATGGCCGAGTGGTCCAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGGGGGC 13151 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||| |||||| Sbjct 13152 GTGGGTTCGAACCCCACTGCTGACA 13176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556846948087600