Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq1917 111 1e-19 seq1762 104 2e-17 >seq1917 Length=1730829 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| || ||| |||| || || || || ||| |||| ||| | Sbjct 507902 ATGCAAATCTTTGTGAAGACGTTGACGGGGAAGACTATCACCTTGGAGGTGGAGAGCTCT 507961 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | | || || || ||| ||||| |||||| |||| |||||| Sbjct 507962 GACACGATTGACAACGTTAAGACGAAGATTCAAGACAAGGAAGGCATTCCTCCCGATCAG 508021 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||||||||||| || |||||||||||||| ||| | || |||| || || || Sbjct 508022 CAAAGGCTTATTTTCGCCGGCAAACAATTGGAGGATGGTCGCACCTTGGCAGACTACAAC 508081 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || ||||||||||| || | |||||||| | || |||| ||||||| Sbjct 508082 ATCCAAAAAGAATCAACCTTGCATTTAGTCCTACGATTGCGAGGTGGCA 508130 >seq1762 Length=742324 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||||||||| || |||| || || || || || |||| |||| | Sbjct 518971 ATGCAAATTTTTGTCAAGACATTGACGGGGAAGACGATAACATTGGAGGTGGAAAGTTCC 519030 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | ||||| ||| || ||||| || ||| | || ||| || Sbjct 519031 GATACTATTGATAATGTAAAGACAAAGATACAGGACAAGGAGGGCATCCCTCCCGACCAG 519090 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || |||||||||| ||| || || ||| ||||||| | ||| |||| ||||||||| Sbjct 519091 CAGAGGCTTATTTTTGCAGGTAAGCAACTGGAAGACGGTCGTACTTTGGCTGATTATAAT 519150 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCG 111401 || ||||| ||||| || | ||| | |||||||| Sbjct 519151 ATCCAAAAGGAATCGACCTTGCATCTTGTGTTGCG 519185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423029739958000