Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1886 134 3e-26 >seq1886 Length=1372085 Score = 134 bits (148), Expect = 3e-26 Identities = 245/351 (70%), Gaps = 7/351 (2%) Strand=Plus/Plus Query 42513 TTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTC 42572 |||||||| ||||||||||| || |||||| | ||||| || ||||| || | Sbjct 694309 TTCTACGGATTCCAGATAGCTATTGAGAACATTCACTCAGAAATGTACAGTTTGTTGTTG 694368 Query 42573 AACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATG 42632 | ||||||| |||| | ||| | | | || ||||| ||||| ||||| || Sbjct 694369 GAGGCGTACATTAAAGATCAAGCTGAGAAGAGCAGACTTTTCAATGCCATTGAGACCATA 694428 Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 || ||| | | |||||| |||||||| || || |||||||| ||| | | | | | Sbjct 694429 CCTTGCGTTGCTAGGAAGGCTGACTGGGCTCTAAAATGGATCGACAGTGCTG--GGAGCT 694486 Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTC-GGGCGCCTT 42751 || | ||||| | | || || || ||||||||| || ||||| || ||| | || Sbjct 694487 TT-GCAGAGAGAATCCTGGCTTTCGCCTGCGTCGAGGGGATTTTCTTTTCAGGGAGTTTT 694545 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810 || ||||||| ||||||||| ||| |||| | ||||| || || || || || |||| Sbjct 694546 TGCG-CCATCTTTTGGCTCAAGAAGAGAGGTCTT-ATGCCAGGGCTTACGTTTTCCAACG 694603 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGT 42861 |||||||| | || ||||| ||||| | || ||||| ||||| |||| Sbjct 694604 AACTCATCTCACGAGATGAGGGCCTGCACTGCGATTTTGCATGCCTGCTGT 694654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944315709562400