Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1943 109 4e-19 seq1762 96.9 3e-15 seq1862 89.7 4e-13 seq1814 87.8 1e-12 seq1705 84.2 2e-11 seq1901 82.4 6e-11 >seq1943 Length=2190071 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || ||||| |||| |||||| ||||||||| ||||||||||||||||||||| || Sbjct 1470071 ACCGCCCCTCAGGCGCAACACCAGGTGAAGCGTGGACTCCTTCTGAATGTTGTAATCGGC 1470012 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || ||| | || ||||| ||||| |||||||| |||| || ||||| || || Sbjct 1470011 CAGAGTACGCCCATCCTCCAACTGCTTTCCGGCAAAAATCAATCGTTGCTGGTCAGGTGG 1469952 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGC 34078 | | |||||||| ||| || ||||| | | | | |||| | || | || Sbjct 1469951 AATACCTTCTTTGTCTTGAATCTTCGTCTTAACGTTATCAATAGTATCTG-AGCTCTCAA 1469893 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | ||| || || || || || || ||||| || || |||||||| Sbjct 1469892 CTTCCAACGTAATCGTCTTCCCCGTCAGCGTTTTGACGAATATTTGCAT 1469844 Score = 105 bits (116), Expect = 5e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||||||| ||||| |||| || || ||| ||||||||||||||||||||| ||| Sbjct 1470298 CCTCCTCTCAAGCGCAGGACCAAGTGCAGGGTGGACTCCTTCTGAATGTTGTAATCAGCC 1470239 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || |||| ||||||||||||||| || || | |||||||||| || Sbjct 1470238 AAAGTACGACCATCTTCCAGTTGCTTGCCGGCAAAGATAAGTCTCTGCTGATCCGGGGGA 1470179 Query 34021 ACGCTCTCTTTGTCCATAATTTT 34043 | | ||||||||| ||| || Sbjct 1470178 ATTCCTTCTTTGTCCTGAATCTT 1470156 Score = 102 bits (112), Expect = 6e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||||| |||| ||| || || | ||| ||||||||||||||| || |||||| Sbjct 1469842 CCACCTCTCAAACGCAACACAAGGTGCAACGTCGACTCCTTCTGAATGTTATAGTCTGCC 1469783 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || ||| |||| ||||| ||||| |||||||| || || | |||||| || || Sbjct 1469782 AACGTACGCCCGTCCTCCAACTGCTTCCCGGCAAAGATAAGCCTCTGCTGGTCGGGAGGG 1469723 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGAT-TCGC 34078 | | ||| |||||| ||| || ||| | | | ||| | |||| | || | ||| Sbjct 1469722 ATCCCCTCCTTGTCCTGAATCTTCGTCTTCACGTTA-TCAATCGTATCCG-AGCTCTCGA 1469665 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | ||| || || || || || | || ||||||||||||||||| Sbjct 1469664 CTTCCAACGTGATCGTCTTCCCCGTCAAGGTCTTCACAAAGATTTGCAT 1469616 >seq1762 Length=742324 Score = 96.9 bits (106), Expect = 3e-15 Identities = 168/243 (69%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||||||||| || ||||| | ||| |||||||||||| |||||||| | | Sbjct 518741 CCTCCCCTCAGCCGCAGGACAAGATGCAACGTCGACTCCTTCTGAATATTGTAATC-GGC 518683 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || | || ||||| ||||| ||||| || |||| |||||||| || || Sbjct 518682 AAGGGTGCGACCATCCTCCAACTGCTTACCGGCGAAGATCAACCGCTGCTGGTCGGGAGG 518623 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC--- 34076 | || ||| |||||| ||| | ||| ||||| |||| ||| || Sbjct 518622 GATGCCCTCCTTGTCCTGAATCT---------TGGTCTTCACATTATCGATAGTATCCGA 518572 Query 34077 GCATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 || |||||| || || || || ||||| || || |||||||| || ||||| || Sbjct 518571 GCTCTCGACCTCCAAGGTGATGGTCTTACCGGTCAGGGTCTTCACAAAAATCTGCATCTT 518512 Query 34131 TAA 34133 || Sbjct 518511 AAA 518509 Score = 95.1 bits (104), Expect = 1e-14 Identities = 167/240 (70%), Gaps = 20/240 (8%) Strand=Plus/Minus Query 33898 AAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCT 33957 || ||||||| || ||||||||||| || || || ||||||||| ||||||||||| Sbjct 519656 AATCCTCCTCGAAGGCGCAGCACCAGGTGCAGTGTTGACTCCTTCTGGATGTTGTAATCA 519597 Query 33958 GCCA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 || | | || || | || |||| |||||||||||||| ||||| |||||||| || Sbjct 519596 GCAAGAGTG-CGACCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGG 519538 Query 34017 CGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC 34076 || | | || |||||| || |||| | ||||| ||||| | | || Sbjct 519537 AGGAATCCCTTCCTTGTCCTGGAT------CTTA---GTCTTCACATTATCAATGGTGTC 519487 Query 34077 ---GCATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || |||||| || || || |||||||| || || || |||||||||||||| Sbjct 519486 CGAGCTCTCGACCTCCAGAGTGATAGTCTTTCCGGTCAGAGTCTTGACAAAGATTTGCAT 519427 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||||||||||||| ||| || || | || |||||||||||| |||||||| || Sbjct 519425 CCTCCTCTCAGCCGCAACACAAGGTGCAAGGTAGACTCCTTCTGAATATTGTAATCCGCG 519366 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | |||| | || ||||| ||||| || || || |||| ||||||||||| || Sbjct 519365 AGAGTTCGCCCATCCTCCAACTGCTTCCCAGCGAAGATCAATCGCTGCTGATCGGGAGGA 519306 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGCA 34079 | | || ||||| ||| ||| ||| | | | |||| | || | ||| Sbjct 519305 ATACCTTCCTTGTCTTGAATCTTTGTCTTCACGTTGTCGATTGTATCCG-AGCTCTCGAC 519247 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | ||| ||||| || || || | || ||||||||||||||||| Sbjct 519246 CTCCAACGTGATTGTCTTGCCCGTCAACGTCTTCACAAAGATTTGCAT 519199 >seq1862 Length=1177009 Score = 89.7 bits (98), Expect = 4e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 33912 CCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGCTC 33971 ||| ||||||||||| || || |||||||| ||||||||||| |||||| ||||| Sbjct 566644 CCGAAGCACCAGATGCAGAGTTGATTCCTTCTGGATGTTGTAATCGGCCAATGTACGCTC 566703 Query 33972 GTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || || ||||| ||||| || || | |||||||||||| Sbjct 566704 ATCCTCTAACTGCTTACCGGCGAAGATTAAGCGCTGCTGATC 566745 >seq1814 Length=924488 Score = 87.8 bits (96), Expect = 1e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| ||||||| ||||| |||||||| | || ||||||||| |||||||| || || Sbjct 463319 ACCACCTCTCAAGCGCAGAACCAGATGCAAGGTTGACTCCTTCTGGATGTTGTAGTCAGC 463260 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || || ||| |||| ||||||||||| || ||||| |||| | |||||| || || Sbjct 463259 -AAGGGTGCGCCCGTCTTCCAATTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCGGGCG 463201 Query 34019 GCACGCTCTCTTTGTCC 34035 | | || ||| || ||| Sbjct 463200 GGATGCCCTCCTTATCC 463184 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 ||||||||||||| ||||| ||| ||||| || |||||||| || |||||| || Sbjct 463765 AGCCGCAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGCCAATGTACGA 463706 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || ||||||||||| || || || || || |||||||| ||| || | | ||| Sbjct 463705 CCATCCTCCAATTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCC 463646 Query 34030 TTGTCCATAATTTT 34043 |||||| ||| || Sbjct 463645 TTGTCCTGAATCTT 463632 >seq1705 Length=561313 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/221 (69%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || |||||||||| || | ||| ||||||||| |||||||| || |||| || Sbjct 93169 AGACGCAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGA 93228 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | ||||||||||| || ||||| ||||| ||||| || | || ||| Sbjct 93229 CCATCTTCGAGCTGCTTGCCGGCGAAAATCAGACGCTGTTGATCGGGAGGAATGCCCTCC 93288 Query 34030 TTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTCGCATTCGACC 34086 |||||| ||||||| || || | || | | |||||| || ||| || | | Sbjct 93289 TTGTCCTGAATTTTTGTTTTCACATTG---TCGATAGTATCAGAGGACTCGACCTCAAGC 93345 Query 34087 GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || || || || || || ||||| ||||| ||||| Sbjct 93346 GTGATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 93386 >seq1901 Length=1553398 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||||| ||| ||||||| || | || |||||||| |||||||| || ||| Sbjct 1018799 CCACCTCTCAACCGGAGCACCAAGTGCAATGTAGATTCCTTCTGGATGTTGTAGTCGGCC 1018740 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || ||| |||| ||||||||||| || || || || || || ||||| || ||| Sbjct 1018739 AACGTACGCCCGTCTTCCAATTGCTTCCCTGCGAAGATAAGTCGTTGCTGGTCAGGCGGG 1018680 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 1018679 ATGCCCTCCTTGTCC 1018665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397052769995980