Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1794 141 1e-28 seq1886 89.7 6e-13 seq1948 84.2 3e-11 seq1833 84.2 3e-11 >seq1794 Length=856596 Score = 141 bits (156), Expect = 1e-28 Identities = 232/333 (70%), Gaps = 5/333 (2%) Strand=Plus/Minus Query 114704 GTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG 114763 |||||||| ||||||||||||||| | |||| || ||||| |||| || ||| Sbjct 303990 GTGTAGAGCTTCTCAAACTCTTCACCCCAGCAATCTGCCAGTCCTGGAGCCTCATTGGGG 303931 Query 114764 CAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAG 114823 ||||| ||||||||| ||| ||| | ||||| ||||||| |||||||| ||||| Sbjct 303930 CAGAAAAGAGACCATACGCCATTCTCTTGCACACGTCTCATGAAAAGGTCTGGAATCCAC 303871 Query 114824 AGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCC 114883 ||| | |||| ||||| ||| | | ||| || | ||| ||||| | | ||| Sbjct 303870 AGACCATAGAATAGATCTCGAGCCCTATTTTCCTCCTTCCCATGATTCTTCCTAAGATCC 303811 Query 114884 AAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTAC-- 114941 | | || | ||||| || |||||||| ||||| || | |||| | ||||| | Sbjct 303810 AGCCAATCGAATATATCGGCATGCCACGGCTCCAGATAGATAGCGAAAGCGCCCTTCCTC 303751 Query 114942 --GACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAAT 114999 | || ||| |||||| || |||| |||||| |||| ||||| | | ||| || || Sbjct 303750 TTGCCG-CCACCCTGGTCGACGTACCGAGCTGTGTCATTGAATACCCTCAACATCGGGAT 303692 Query 115000 GATACCATCAGATTGGCCATTTGTCCCCCGAAT 115032 ||| |||| ||| || ||||| || ||||| Sbjct 303691 GATCCCATTAGAAGTCCCGTTTGTGCCACGAAT 303659 Score = 118 bits (130), Expect = 1e-21 Identities = 306/457 (67%), Gaps = 16/457 (4%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 |||||||| | ||||| ||||| ||||| |||||||| ||||||||||| ||| || Sbjct 305175 TAGATATTCGATGTGTAAGGCTCGAAGCATTCATTGTTGCCCAAGATTTGACTGGTTGAT 305116 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACC---CTTTTCCCTAATGCGT 114058 |||||||||||||| |||| ||||| |||||| | ||| ||| | | |||||| Sbjct 305115 GCTGTGGGCATGGGAGCCAAAAGAAGAGAGTTACGCACACCGTTCTTAGCAATCATGCGT 305056 Query 114059 TCCTTGAGGGCGTCCCAGTCGTA-GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTG 114117 | | || |||||||| | ||||| | || | | ||||||||| || Sbjct 305055 ---CTCAAAGCATCCCAGTCCCATCTTGAG-GAGGGCTTGACATCCCACATATCCGGTTG 305000 Query 114118 GAGGA-TACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCG 114176 |||| | ||||| | || |||| ||| | || ||||| ||||| | | | Sbjct 304999 AAGGAGTCCCTTGCTA-ATAGGACATCCATCATACGTTTCGTAGACACCCTCCTCTGCTG 304941 Query 114177 CCAATTCG---GAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCAT 114233 |||||||| ||| | |||| || || || || || |||||||| || | Sbjct 304940 CCAATTCGCATGAGGT--CCTC-AGTGCGTGGTAGTATATGGTCTCAAATATATCTCTGT 304884 Query 114234 TCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGA 114293 | | || |||||| || |||||||| | | | || ||| || | || || | Sbjct 304883 TGAGCTTCTGGGCCTCTTCAGAATCAAATGGCATGCCAAGCAGAATGAAGGCGTCAGCAA 304824 Query 114294 GACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCA 114353 | ||||| || ||||| ||||| || ||||| | ||| || || ||| || | ||| | Sbjct 304823 GGCCTTGCACTCCGAGACCAATAGGACGATGGCGCATGTTCGATCTTCTCGCAGCCTCGA 304764 Query 114354 CGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 114390 |||| ||| | || |||||||| || |||||||| Sbjct 304763 CGGGGTAATAGTTTACATCGATAATTCTGTTTAGATT 304727 >seq1886 Length=1372085 Score = 89.7 bits (98), Expect = 6e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| || ||||| || || ||||||||||| || || || || ||| Sbjct 694643 GCAAAATCGCAGTGCAGGCCCTCATCTCGTGAGATGAGTTCGTTGGAAAACGTAAGCCCT 694584 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| ||||| | |||||| | ||| || || || ||||| || || ||||| || Sbjct 694583 GGCATAAGACCTCTCTTCTTGAGCCAAAAGATGGCGCAAAAACTCCCTGAAAAGAAAATC 694524 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 ||||| || || ||||| || | || | ||| |||||| Sbjct 694523 CCCTCGACGCAGGCGAAAGCCAGGATTCTCTCTGCAAAG 694485 >seq1948 Length=2296919 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| | ||||| || || || |||||||||||||| || || ||| Sbjct 1731518 GCAAAATCGCAGTGTAAGCCCTCATCTCGTGAAATGAGTTCATTCGAAAAAGTAAGCCCT 1731577 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAA 126147 |||||||| |||| |||||||| ||| ||||| |||||||| Sbjct 1731578 GGCATGAGCCCCCTCTTCTTCAGCCAAAAAATGGCACAAAA 1731618 >seq1833 Length=1020455 Score = 84.2 bits (92), Expect = 3e-11 Identities = 195/291 (67%), Gaps = 6/291 (2%) Strand=Plus/Plus Query 10783 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 10842 || ||||||||||||||| || || | | || | |||||||||||| | ||| || Sbjct 229283 CTGACGATCAAAGCGACCGGGTCGCAATAAAGCAGCATCAAGGATATCAGCTCTGTTGGT 229342 Query 10843 CGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTG 10902 || || || || | | || || | | ||||| |||||||| || |||| ||| || Sbjct 229343 AGCAGCAATAACTATAACACCTGTGTTGCCCTCAAATCCATCCATTTCTGTCAGGAGCTG 229402 Query 10903 ATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCA---CCCGCACTGCGTTGCTT 10959 || | ||||||||| |||||||| || || | |||| || | || | |||| Sbjct 229403 GTTCAAGGTTTGTTCTCGTTCATCGTT-GCCACC--ACCAATGCCAGTACCCCTTTGCCG 229459 Query 10960 ACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC 11019 ||||| || || || || || | || || ||||| || ||| || ||| | Sbjct 229460 TCCGACAGCATCGATCTCGTCCACAAAGACAATACAAGGAGCATTCTCTTTGGCTTTCTT 229519 Query 11020 AAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAA 11070 |||| || || |||| | ||||| || ||||| ||||| || || || Sbjct 229520 GAAGAGGTCACGTACTCGCGATGCACCAACTCCCACGAACATCTCGACGAA 229570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597338740829200